Web Services Reference Guide - Europe PubMed Central

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Europe PMC. inPMC Values: Y or N; this indicates whether the citation is available as full text in PMC citedByCount A count that indicates the number of times an article has been cited by other articles in our databases. hasReferences Values: Y or N; this indicates whether an article has a reference list or not. The value Y can only be returned for articles that are available as full text in Europe PMC. hasTextMinedTerms Values: Y or N; this indicates whether the article has any associated text-mined terms. The value Y can only be returned for articles that are available as full text in Europe PMC. hasDbCrossReferences Values: Y or N; this indicates whether an article has any cross references to biomolecular databases. dbCrossReferenceList If the value of hasDbCrossReferences is Y, then this element gives a list of the databases crossreferenced. E.g. EMBL OMIM UNIPROT ARXPR See also the ‘database’ parameter of the getDatabaseLinks method for database values and hyperlinks. hasTMAccessionNumbers Values: Y or N; this indicates whether an article has any text-mined accession number references tmAccessionTypeList accessionType to biomolecular databases. If the value of hasTMAccessionNumbers is Y, then this element gives a list of the databases crossreferenced. E.g. arrayexpress doi ensembl gen interpro omin pdb EBI Europe PMC Web Service 3.0.1 Reference Guide © EMBL-EBI 2014, Document Version 1.20 15
EBI Europe PMC Web Service 3.0.1 Reference Guide © EMBL-EBI 2014, Document Version 1.20 pfam refseq refsnp sprot NOTE: The ‘doi’ accession type can be used to link to various data repositories. luceneScore Gives the rank of the Lucene search engine, the greater the number the higher the ranking. authorList List of author details which contains full name, initials and last name: author fullName firstName lastName initials authorId affiliation Full Name of author, e.g. Hubbard T First Name of author, e.g. Tim Last Name of author, e.g. Hubbard Initials of author, e.g. T The ID type and value (where available), e.g. type="ORCID">0000-0002-1767-9318 The author’s affiliation, note that affiliations for multiple authors are available for MEDLINE records (where provided) from the beginning of 2014. authorIdList All the author IDs linked to the article are listed together with the type: authorId investigatorList investigator fullName lastName initials journalInfo issue volume journalIssueId dateOfPublication monthOfPublication yearOfPublication journal title e.g. type="ORCID">0000-0002-3908-1122 List of investigator details which contains full name, initials and last name: Full Name of author, e.g. Orlandini F Last Name of author, e.g. Orlandini Initials of author, e.g. F journalInfo element gives the full details of a journal Issue of the journal Volume of the journal Identifier of the journal issue Date of publication Month of publication Year of publication Title of the journal 16
Page 1 and 2: EBI Europe PMC Web Service 3.0.1 Re
Page 3 and 4: Revision History Date Version Detai
Page 5 and 6: 1. Introduction This web service gi
Page 7 and 8: getTextMinedTerms getFullTextXML ge
Page 9 and 10: 3. Data Sources Europe PMC contains
Page 11 and 12: 5. Method: profilePublications Requ
Page 13 and 14: have a ‘EUROPEPMC’ category: A
Page 15: searchPublications Method Output: T
Page 19 and 20: agency acronym orderIn meshHeadingL
Page 21 and 22: dateOfCreation Article or book or r
Page 23 and 24: 7. Method: getDatabaseLinks Request
Page 25 and 26: Use of Elements info1 to 4 for the
Page 27 and 28: getReferences Method Output: Elemen
Page 29 and 30: 9. Method: getCitations Request/Inp
Page 31 and 32: 10. Method: getLabsLinks Request/In
Page 33 and 34: 11. Method: getTextMinedTerms Reque
Page 35 and 36: getTextMinedTerms Output: Element D
Page 37 and 38: 12. Method: getFullTextXML Referenc
Page 39 and 40: 13. Method: getSupplementaryFiles R
Page 41 and 42: 14. Method: listSearchFields Also s
Page 43 and 44: IN_EPMC Y N ISBN Y Y ISSN Y Y ISSUE
Page 45 and 46: VOLUME: ISSUE: SPAGE: Search for jo
Page 47 and 48: AUTH_MAN_ID: Find an article by spe
Page 49 and 50: CHEBI_PUBS: Show publications with
Page 51: FIG: INTRO: KEYWORD: METHODS: OTHER

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