Web Services Reference Guide - Europe PubMed Central

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ACCESSION_TYPE: Find papers that cite European Nucleotide Archive records Find papers that cite UniProt records Find papers that cite PDB records Find papers that cite OMIM records Find papers that cite RefSNP records Find papers that cite RefSeq records Find papers that cite Pfam records Find papers that cite InterPro records Find papers that cite Ensembl records Find papers that cite ArrayExpress records Find papers that cite data DOIs ACCESSION_TYPE:gen ACCESSION_TYPE:sprot ACCESSION_TYPE:pdb ACCESSION_TYPE:omim ACCESSION_TYPE:refsnp ACCESSION_TYPE:refseq ACCESSION_TYPE:pfam ACCESSION_TYPE:interpro ACCESSION_TYPE:ensembl ACCESSION_TYPE:arrayexpress ACCESSION_TYPE:doi Section-level search ABBR: ACK_FUND: APPENDIX: AUTH_CON: CASE: COMP_INT: CONCL: DISCUSS: Find articles with word “mRNA” in the Abbreviations section Find articles with word “ERC” in the Acknowledgements & Funding section Find articles with word “ethics” in the Appendix section Find articles with phrase “Smith” in the Author Contribution section Find articles with word “leukemia” in the Case Study section Find articles with phrase “no conflict” in the Competing Interest section Find articles with word “osteoporosis” in the Conclusion section Find articles with word “cardiovascular” in the Discussion section ABBR:mRNA ACK_FUND:ERC APPENDIX:ethics AUTH_CON:“Smith” CASE:leukemia COMP_INT:“no conflict” CONCL:osteoporosis DISCUSS:cardiovascular EBI Europe PMC Web Service 3.0.1 Reference Guide © EMBL-EBI 2014, Document Version 1.20 49
FIG: INTRO: KEYWORD: METHODS: OTHER: REF: RESULTS: SUPPL: TABLE: Find articles with phrase “in vitro” in the Figures section Find articles with phrase “protein interactions” in the Introduction & Background section Find articles with word “isoform” in the Keywords section Find articles with phrase “yeast twohybrid” in the Materials & Methods section Find articles with phrase “transgenic mice” in the Others section Find articles with word “COX2” in the References section Find articles with phrase “in vivo” in the Results section Find articles with word “supplementary” in the Supplementary Information section, indicating where supplementary data might be available. Find articles with word “comparison” in the Tables section FIG:“in vitro” INTRO:“protein interactions” KEYWORD:isoform METHODS:“yeast two-hybrid” OTHER:“transgenic mice” REF:COX2 RESULTS:“in vivo” SUPPL:supplementary TABLE:comparison EBI Europe PMC Web Service 3.0.1 Reference Guide © EMBL-EBI 2014, Document Version 1.20 50
Page 1 and 2: EBI Europe PMC Web Service 3.0.1 Re
Page 3 and 4: Revision History Date Version Detai
Page 5 and 6: 1. Introduction This web service gi
Page 7 and 8: getTextMinedTerms getFullTextXML ge
Page 9 and 10: 3. Data Sources Europe PMC contains
Page 11 and 12: 5. Method: profilePublications Requ
Page 13 and 14: have a ‘EUROPEPMC’ category: A
Page 15 and 16: searchPublications Method Output: T
Page 17 and 18: EBI Europe PMC Web Service 3.0.1 Re
Page 19 and 20: agency acronym orderIn meshHeadingL
Page 21 and 22: dateOfCreation Article or book or r
Page 23 and 24: 7. Method: getDatabaseLinks Request
Page 25 and 26: Use of Elements info1 to 4 for the
Page 27 and 28: getReferences Method Output: Elemen
Page 29 and 30: 9. Method: getCitations Request/Inp
Page 31 and 32: 10. Method: getLabsLinks Request/In
Page 33 and 34: 11. Method: getTextMinedTerms Reque
Page 35 and 36: getTextMinedTerms Output: Element D
Page 37 and 38: 12. Method: getFullTextXML Referenc
Page 39 and 40: 13. Method: getSupplementaryFiles R
Page 41 and 42: 14. Method: listSearchFields Also s
Page 43 and 44: IN_EPMC Y N ISBN Y Y ISSN Y Y ISSUE
Page 45 and 46: VOLUME: ISSUE: SPAGE: Search for jo
Page 47 and 48: AUTH_MAN_ID: Find an article by spe
Page 49: CHEBI_PUBS: Show publications with

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