INMUNOINFORMATICA - CNB - Protein Design Group
INMUNOINFORMATICA - CNB - Protein Design Group
INMUNOINFORMATICA - CNB - Protein Design Group
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HIV1<br />
Selection of Conserved CTL<br />
GAG<br />
POL<br />
ENV<br />
VIF<br />
TAT<br />
REV<br />
VPU/VPX<br />
VPR<br />
NEF<br />
Clustalw<br />
GAG.aln<br />
POL.aln<br />
ENV.aln<br />
VIF.aln<br />
TAT.aln<br />
REV.aln<br />
VPU.aln<br />
VPR.aln<br />
NEF.aln<br />
Mask variability<br />
GAG.seq<br />
POL.seq<br />
ENV.seq<br />
VIF.sea<br />
TAT.seq<br />
REV.seq<br />
VPU.seq<br />
VPR.seq<br />
NEF.seq<br />
G I W G C S G K L I C T T N V P W N S S W S N K S Q S E I W D N M<br />
H=1<br />
Shannon filter<br />
G I W G C S G K L I C T T . V P W N S S W S N K S . . E I W . N M<br />
Only HIV-1 specific CTL epitopes that match the consensus sequences<br />
are considered for further analysis
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