The biclust Package - NexTag Supports Open Source Initiatives
The biclust Package - NexTag Supports Open Source Initiatives
The biclust Package - NexTag Supports Open Source Initiatives
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22 INDEXBiclustMethod-class, 9, 11BiclustMethod-class, 9BiclustResult (Biclust-class), 8Bimax (BCBimax), 1binarize, 12binarizeByPercentage (binarize),12bubble plot (bubbleplot), 13bubbleplot, 13, 17, 19CC (BCCC), 3coherence, 15constantVariance (coherence), 15densityOnes (binarize), 12discretize, 16drawHeatmap, 14, 17, 19E. coli microarray syntheticdata matrix(SyntrenEcoli), 10EisenYeast, 10Escherichia Coly data matrixgenerated by SynTReN(SyntrenEcoli), 10spectral (BCSpectral), 5spectral <strong>biclust</strong>ering(BCSpectral), 5star graph (bubbleplot), 13summary,Biclust-method(Biclust-class), 8SyntrenEcoli, 10turner <strong>biclust</strong>ering (BCPlaid), 4writeBiclusterResults, 19writeBiclusters(writeBiclusterResults), 19Xmotif (BCXmotifs), 7yeast microarray data matrix(EisenYeast), 10yeast microarray reduced datamatrix (BicatYeast), 8heatmap (drawHeatmap), 17jaccardind, 18Kluger <strong>biclust</strong>ering (BCSpectral),5multiplicativeVariance(coherence), 15parallel coordinates(parallelCoordinates), 18parallelCoordinates, 14, 17, 18plaid (BCPlaid), 4plaid model (BCPlaid), 4Saccharomices Cerevisiae datamatrix (EisenYeast), 10Saccharomices Cerevisiaereduced data matrix(BicatYeast), 8show,Biclust-method(Biclust-class), 8signVariance (coherence), 15
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