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Variational Principles in Conformation Dynamics - FU Berlin, FB MI

Variational Principles in Conformation Dynamics - FU Berlin, FB MI

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Bibliography[Behrends, 2011] Ehrhard Behrends,Markovprozesse und stochastische Differentialgleichungen,<strong>FU</strong> Berl<strong>in</strong>, 2011,http://page.mi.fu-berl<strong>in</strong>.de/bhrnds/stochdg2011/[Evans] Lawrence C. Evans,An Introduction to Stochastic Differential Equations,University of California,http://math.berkeley.edu/~evans/SDE.course.pdf[Noé, 2011] Frank Noé,A <strong>Variational</strong> Approach to Modell<strong>in</strong>g Slow Processes <strong>in</strong> Stochastic Dynamical Systems,<strong>FU</strong> Berl<strong>in</strong>, 2011,http://compmolbio.biocomput<strong>in</strong>g-berl<strong>in</strong>.de/<strong>in</strong>dex.php/publications[Pr<strong>in</strong>z et al, 2011] Jan-Hendrik Pr<strong>in</strong>z, Hao Wu, Marco Sarich, Bett<strong>in</strong>a Keller, Mart<strong>in</strong> Senne,Mart<strong>in</strong> Held, John D. Chodera, Christof Schütte and Frank Noé,Markov models of molecular k<strong>in</strong>etics: Generation and validation,The Journal of Chemical Physics 134, 174105, 2011[Sarich, Noé, Schütte, 2010] Marko Sarich, Frank Noé and Christof Schütte,On the Approximation Quality of Markov State Models,SIAM Multiscale Model. Simul., 8 : 1154 - 1177, 2010.[Schütte, Huis<strong>in</strong>ga, Deuflhard, Fischer, 1999] Christof Schütte, Alexander Fischer, WilhelmHuis<strong>in</strong>ga and Peter DeuflhardA Direct Approach to <strong>Conformation</strong>al <strong>Dynamics</strong> based on Hybrid Monte Carlo,J. Comput. Phys., 151 : 146 - 168, 1999[Szabo, Ostlund, 1989] Attila Szabo and Neil S. Ostlund,Modern Quantum Chemistry,1st edition, revised, McGraw-Hill Publish<strong>in</strong>g, New York, 1989[VMD, 1996] W. Humphrey, A. Dalke and K. Schulten,VMD - Visual Molecular <strong>Dynamics</strong>,J. Molec. Graphics, 14 : 33 - 38.[Weber, 2010] Markus Weber,

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