Microarray Data Analysis Using BRB-ArrayTools Version 4.2.0 ...

Gene lists• Genelists are used for annotation and for defining subsets for analysis. aThese files are located in the ArrayTools installation folder.• Two types of genelists: CGAP, and user-defined• CGAP (Cancer Genome Anatomy Project) genelists are pre-loaded withBRB-ArrayTools.• User-defined genelists are simply text files which the user creates,containing a label specifying the type of identifier, followed by a list ofgene identifiers. The file should be appropriately named to indicateicatewhat type of genes are in the list. Some user-defined genelists areautomatically produced as the result of an analysis, such as classcomparison, class prediction, survival analysis, and hierarchicalclustering of genes.• User-defined genelists are stored in the “project” folder (for projectspecific) or ArrayTools folder (visible to all projects.)36