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OBRAZEC ZA PREDLOG PREDMETA - IMI

OBRAZEC ZA PREDLOG PREDMETA - IMI

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- tekoča periodika6. Metode poučevanja in učenja:Pouk bo organiziran po modulih z uvodnimi predavanji, ki jim bo sledilo seminarskoobravnavanje vsebine posameznega modula. Pristop temelji na samostojnem delu študenta obsodelovanju učiteljev (priprava na seminarske naloge, predstavitev seminarskih nalog,konzultacije z učitelji, priprava na izpit in izpit).7. Preverjanja znanja – obveznosti študenta:Obveznosti študenta zajemajo po eno seminarsko nalogo v vsakem modulu z javnopredstavitvijo ter končno preverjanje poznavanja vsebine predmeta s pisnim ali ustnimizpitom.8. Reference izvajalcev predmeta:prof. dr. Srečko Koren- Fleischmann WR, Koren S. Systemic effects of orally administered interferons andinterleukin-2. J Interferon Cytokine Res 1999; 19: 829–39.- Banič S, Koren S, Tomažič J, Vidmar L, Ihan A, Poljak M, Avšič-Županc T. Influenzavaccination of human immunodeficiency virus 1-infected patients receiving antiretroviraltherapy. Acta Virol 2001; 45: 39–44.- Koren S, Avšič-Županc T, Drinovec B, Marin J, Poljak M. Splošna medicinskavirologija. 2. ponatis. Ljubljana, Medicinski razgledi, 2005.prof. dr. Mario Poljak- Poljak M, Brenčič A, Seme K, Vince A, Marin IJ. Comparative evaluation of first andsecond-generation Digene hybrid capture assay for detection of human papillomavirusesassociated with high or intermediate risk for cervical cancer. J Clin Microbiol 1999; 37:796–7.- Poljak M, Marin IJ, Seme K, Brinovec V, Matičič M, Meglič-Volkar J, Lešničar G,Vince A. Second-generation hybrid capture test and amplicor monitor test generatehighly correlated hepatitis B virus DNA levels. J Virol Methods 2001; 97: 165–9.- Poljak M, Marin IJ, Seme K, Vince A. Hybrid capture II HPV test detects at least 15human papillomavirus genotypes not included in its current high-risk probe cocktail. JClin Virol 2002; 25, suppl. 3: S89–97.prof. dr. Gorazd Avguštin- Avguštin G, Wallace JR, Flint HJ. Phenotypic diversity among ruminal isolates ofPrevotella ruminicola: proposal of Prevotella brevis sp. nov., Prevotella bryantii sp.nov., and Prevotella albensis sp. nov. and redefiniton of Prevotella ruminicola. Int J S ysBacteriol 1997; 47: 284–8.- Ramšak A, Peterka M, Tajima K, Martin JC, Wood J, Johnston MEA, Aminov RI, FlintHJ, Avguštin G. Unravelling the genetic diversity of ruminal bacteria belonging to theCFB phylum. FEMS Microbiol Ecol 2000; 33: 69–79.- Kostanjšek R, Štrus J, Drobne D, Avguštin G. 'Candidatus Rhabdochlamydiaporcellionis', an intracellular bacterium from thehepatopancreas of the terrestrial isopodPorcellio scaber (Crustacea: Isopoda). Int J Syst Evol Microbiol 2004; 54: 543–9.prof. dr. David Stopar- Stopar D, Spruijt RB, Wolfs CJAM, Hemminga MA. Mimicking initial interactions ofbacteriophage M13 coat protein disassembly in model membrane systems. Biochemistry(Easton) 1998; 37: 10181–7.- Stopar D, Černe A, Žigman M, Poljšak-Prijatelj M, Turk V. Viral abundance and a highproportion of lysogens suggest that viruses are important members of the microbial


community in the Gulf of Trieste. Microb Ecol 2004; 47:1–8.- Dogša I, Kriechbaum M, Stopar D, Laggner P. Structure of bacterial extracellularpolymeric substances at different pH values as determined by SAXS. Biophys J 2005; 89:2711–20.prof. dr. Tatjana Avšič Županc- Avšič-Županc T, Nemirov K, Petrovec M, Trilar T, Poljak M, Vaheri A, Plyusnin A.Genetic analysis of wild-type Dobrava hantavirus in Slovenia: co-existance of twodistinct genetic lineages within the same natural focus. J Gen Virol 2000; 81: 1747–55.- Saksida A, Duh D, Lotrič-Furlan S, Strle F, Petrovec M, Avšič-Županc T. Theimportance of tick-borne encephalitis virus RNA detection for early differential diagnosisof tick-borne encephalitis. J Clin Virol 2005; 33: 331–5.- Cvetko L, Markotić A, Plyusnina A, Margaletić J, Miletić-Medved M, Turk N, Milas Z,Avšič-Županc T, Plyusnin A. Puumala Virus in Croatia in the 2002 HFRS Outbreak. JMed Virol 2005; 77: 290–4.prof. dr. Jernej Logar- Logar J. Parazitologija v medicini. 1. izd. Ljubljana, DZS, 1999.- Logar J, Petrovec M, Novak-Antolič Ž, Premru-Sršen T, Čižman M, Arnež M, Kraut A.Prevention of congenital toxoplasmosis in Slovenia by serological screening of pregnantwomen. Scand J Infect Dis 2002; 34: 201–4.- Logar J, Šoba B, Kraut A, Stirn-Kranjc B. Seroprevalence of Toxocara antibodies amongpatients suspected of ocular toxocariasis in Slovenia. Korean J Parasitol 2004: 42: 137–40.prof. dr. Manca Müller-Premru- Müller-Premru M, Gubina M, Kaufmann M E, Primožič J, Cookson B D. Use of semiquantitativeand quantitative culture methods and typing for studing the epidemiology ofcentral venous catheter-related infections in neonates on parenteral nutrition. J MedMicrobiol 1999; 48: 451–60.- Müller-Premru M, Lejko-Zupanc T. Epidemiological typing of imipenem-resistantPseudomonas aeruginosa. Int J Antimicrob Agents 2002; 20: 380–3.- Müller-Premru M, Černelč P. Molecular epidemiology of catheter-related bloodstreaminfections caused by coagulase-negative staphylococci in haematological patients withneutropenia. Epidemiol Infect 2004; 132: 921–5.doc. dr. Katja Seme- Seme K, Poljak M, Lešničar G, Brinovec V, Štepec S, Koren S. Distribution of hepatitisC virus genotypes in Slovenia. Scand J Infect Dis 1997; 29: 29–31.- Seme K, Poljak M, Begovac J, Vince A, Tomažič J, Vidmar L, Kniewald T. Lowprevalence of hepatitis C virus infection among human immunodeficiency virus type 1-infected individuals from Slovenia and Croatia. Acta Virol 2002; 46: 91–4.- Seme K, Poljak M, Babič DZ, Močilnik T, Vince A. The role of core antigen detection inmanagement of hepatitis C: a critical review. J Clin Virol 2005; 32: 92–101.prof. dr. Nina Gunde Cimerman- Zalar P, De Hoog GS, Gunde-Cimerman N. Taxonomy of the endoconidial black yeastgenera Phaeotheca and Hyphospora. V: De Hoog GS. (ur.). Ecology and evolution ofblack yeasts and their relatives, (Studies in mycology, no. 43). Baarn; Delft:Centraalbureau voor Schimmelcultures; Amsterdam: An Institute of the Royal


Netherlands Academy of Arts and Sciences, 1999; 49–56.- Zalar P, De Hoog GS, Schroers H-J, Frank JM, Gunde-Cimerman N. Taxonomy andphylogeny of the xerophilic genus Wallemia (Wallemiomycetes and Wallemiales, cl. etord. nov.). Antonie van Leeuwenhoek 2005; 87: 311–28.- Butinar L, Zalar P, Frisvad JC, Gunde-Cimerman N. The genus Eurotium - members ofindigenous fungal community in hypersaline waters of salterns. FEMS Microbiol Ecol2005; 51: 155–66.prof. dr. Ines Mandič-Mulec- Mandić-Mulec I, Weiss J, Zychlinsky A. Shigella flexneri is trapped onpolymorphonuclear leukocyte vacuoles and efficiently killed. Infect Immun 1997; 65:110–5.- Ansaldi M, Marolt D, Stebe T, Mandić-Mulec I, Dubnau DA. Specific activation of theBacillus quorum-sensing systems by isoprenylated pheromone variants. Mol Microbiol2002; 44: 1561–73.- Albano M, Smits WK, Ho LTY, Kraigher B, Mandić-Mulec I, Kuipers OP, Dubnau DA.The Rok protein of Bacillus subtilis represses genes for cell surface and extracellularfunctions. J Bacteriol 2005; 187: 2010–9.prof. dr. Romana Marinšek Logar- Čepeljnik T, Zorec M, Kostanjšek R, Nekrep FV, Marinšek-Logar R. IsPseudobutyrivibrio xylanivorans Mz5T suitable as a probiotic? : an in vitro study. FoliaMicrobiol 2003; 48: 339–45.- Čepeljnik T, Križaj I, Marinšek-Logar R. Isolation and characterization of thePseudobutyrivibrio xylanivorans Mz5 xylanase XynT - the first family 11 endoxylanasefrom rumen Butyrivibrio-related bacteria. Enzyme Microb Technol 2004; 34: 219–27.- Lah B, Žinko B, Narat M, Marinšek-Logar R. Monitoring of genotoxicity in drinkingwater using in vitro comet assay and Ames test. Food Technol Biotechnol 2005; 43: 139–46.prof. dr. Peter Raspor- Trček J, Raspor P, Teuber M. Molecular identification of Acetobacter isolates fromsubmerged vinegar production, sequence analysis of plasmid pJK2-1 and application indevelopment of a cloning vector. Appl Microbiol Biotechnol 2000; 53: 289–95.- Raspor P, Fujs Š, Banszky L, Maraz A, Batič M. The involvement of ATP sulfurylase inSe(VI) and Cr(VI) reduction processes in the fission yeast Schizosaccharomyces pombe.Appl Microbiol Biotechnol 2003; 63: 89–95.- Povhe Jemec K, Raspor P. Initial Saccharomyces cerevisiae concentration in single orcomposite cultures dictates bioprocess kinetics. Food Microbiol 2005; 22: 293–300.doc. dr. Kristina Sepčić- Sepčić K, Berne S, Potrich C, Turk T, Maček P, Menestrina G. Interaction of ostreolysin,a cytolytic protein from the edible mushroom Pleurotus ostreatus, with lipid membranesand modulation by lysophospholipids. Eur J Biochem 2003; 270: 1199–210.- Berne S, Sepčić K, Križaj I, Kem WR, Mcclintock JB, Turk T. Isolation andcharacterisation of a cytolytic protein from mucus secretions ofthe Antarticheteronemertine Parborlasia corrugatus. Toxicon 2003; 41: 483–91.- Berne S, Sepčić K, Anderluh G, Turk T, Maček P, Poklar UN. Effect of pH on the poreforming activity and conformational stability of ostreolysin, a lipid raft-binding proteinfrom the edible mushroom Pleurotus ostreatus. Biochemistry 2005; 44: 11137–47.


prof. dr. Sonja Smole Možina- Piškur J, Smole Možina S, Groth C, Petersen RF, Pedersen MB. Structure and geneticstability of mitochondrial genomes vary among yeasts of the genus Saccharomyces. Int JSyst Bacteriol 1998; 48: 1015–24.- Zorman T, Smole Možina S. Optimisation of specific PCR detection of Campylobactercoli in enrichment broth. Acta Aliment 2004; 33: 87–94.- Klančnik A, Botteldoorn N, Herman L, Smole Možina S. Survival and stress inducedexpression of groEL and rpoD of Campylobacter jejuni from different growth phases. IntJ Food Microbiol 2005: 1–11.doc. dr. Peter Trontelj- Verovnik R, Sket B, Prevorčnik S, Trontelj P. Random amplified polymorphic DNAdiversity among surface and subterranean populations of Asellus aquaticus (Crustacea:Isopoda). Genetica 2003; 119: 155–65.- Trontelj P, MachinoY, Sket B. Phylogenetic and phylogeographic relationships in thecrayfish genus Austropotamobius inferred from mitochondrial COI gene sequences. MolPhylogenet Evol 2005; 34: 212–26.- Trontelj P, Utevsky S Y. Celebrity with a neglected taxonomy: molecular systematics ofthe medicinal leech (genus Hirudo). Mol Phylogenet Evol 2005; 34: 616–24.prof. dr. Tom Turk- Sepčić K, Mancini I, Vidic I, Jovan U, Frassanito R, Pietra F, Maček P, Turk T.Antibacterial and anticholinesterase activities of aplysamine-4, a bromotyrosine-derivedmetabolite of a Red Sea marine sponge. J Nat Toxins 2001; 10: 181–91.- Berne S, Križaj I, Pohleven F, Turk T, Maček P, Sepčić K. Pleurotus and Agrocybehemolysins, new proteins hypothetically involved in fungal fruiting. Biochim BiophysActa 2002; 1570: 153–9.- Faimali M, Sepčić K, Turk T, Geraci S. Non-toxic antifouling activity of polymeric 3-alkylpyridium salts from the Mediterranean sponge Reniera sarai (Pulitzer-Finali).Biofouling 2003; 19: 47–56.prof. dr. Ramon Rossello-Mora- Rossello-Mora R. Updating prokaryotic taxonomy. J Bacteriol 2005; 187: 6255–7.- Rossello-Mora R. Opinion: the species problem, can we achieve a universal concept?Syst Appl Microbiol 2003; 26: 323–6.- Rossello-Mora R, Amann R. The species concept for prokaryotes. FEMS Microbiol Rev2001; 25: 39–67.

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