Chem3D 8.0 Manual - CambridgeSoft

AdministratorAtom typesassigning automatically 12automatic application of standards 14automatic rectification 12changing 48changing in model 53charges 57creating 6number field 13overview 11pop-up information 89relation to bond order 54Atom Types table 15, 18Atom Weight field 28Atomsaligning to plane 67changing 52changing atom types 53changing element types 52color 73coloring 78coloring by element 76coloring by group 76, 97colorizing individually 77display options 79displaying element symbols 79displaying serial numbers 79mapping colors onto surfaces 88moving 56, 64moving to an axis 67selecting 15, 47, 61size 73, 79tinting 78Automaticallyapply standard measurements 44correct atom types 44fit model to window 44rectify 44Available properties 193Axes, origin 6BBackground color 77Ball & Stick display 74Basis set 132, 134Bending constants 26Bending Energy, MM2 191Beta amino acids 51BFGS 157Bitmap file format 108Black model 65bmp file format 108Boiling Point, ChemProp Pro 189Bond anglesparameters 14setting 55showing 93tutorial example 20Bond Dipole field 21Bond Display control panel 73Bond lengthsparameters 14pop-up information 89setting 55showing 92tutorial example 20, 27Bond order matrix 175Bond orderschanging 53pi systems 127pop-up information 89relation to atom type 54tutorial example 20Bond Proximate Additioncommand 54control 55Bond stretching energy 123Bond stretching force constant field 21Bond Stretching table 16, 21Bond toolsdescription 44tutorial example 19Bond Type field 21, 24, 31BONDS 175ii • IndexCambridgeSoft