EMBL-EBI Annual Scientific Report 2012

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Organisation ofEMBL-EBI Leadership 2012Janet ThorntonDirectorEwan BirneyAssociate DirectorRolf ApweilerAssociate Director) RESEARCH GROUPS( SERVICE TEAMSBERTONE GroupPaul BertoneFunctional GenomicsAlvis BrazmaProtein Databank EuropeGerard KleywegtENRIGHT GroupAnton EnrightFunctional Genomics Dev.Ugis SarkansPDBe Databases & ServicesTom OldfieldGOLDMAN GroupNick GoldmanFunctional Genomics Prod.Helen ParkinsonPDBe Content & Intg.Sameer VelankarLE NOVERE GroupNicolas Le Novère (visiting)Proteomic ServicesHenning HermjakobLUSCOMBE GroupNicholas Luscombe (visiting)MARIONI GroupJohn MarioniREBHOLZ GroupDietrich Rebholz-Schuhman(visiting); ADMINISTRATIONMark GreenN EXTERNAL RELATIONSLindsey CrosswellSAEZ GroupJulio Saez-RodriguezT EXT. FACING ACTIVITIESTHORNTON GroupJanet ThorntonTrainingCath BrooksbankIndustry ProgrammeDominic Clark8 2012 EMBL-EBI Annual Scientific Report
Protein ResourcesAlex BatemanVertebrate GenomicsPaul FlicekChemogenomicsJohn OveringtonUniProt ContentClaire O’DonovanNon-Vertebrate GenomicsPaul KerseyCheminformaticsChristoph SteinbeckUniProt DevelopmentMaria-Jesus MartinVariationJustin PaschallInterproSarah HunterEur. Nucleotide ArchiveGuy CochraneLiteratureJohanna McEntyreS TECHNICAL SUPPORTWeb DevelopmentBrendan VaughanWeb ProductionRodrigo LopezSystemsPetteri Jokinen2012 EMBL-EBI Annual Scientific Report9
Page 1 and 2: EMBL-European Bioinformatics Instit
Page 3: Table of contentsIntroduction & ove
Page 6 and 7: EMBL-EBI 2012It was a year of trans
Page 8 and 9: New service developments• Underst
Page 12 and 13: dGenes, genomes and variationThe Eu
Page 14 and 15: dGenes, genomes and variationSummar
Page 16 and 17: European Nucleotide ArchiveOur team
Page 18 and 19: Vertebrate genomicsThe Vertebrate G
Page 20 and 21: Nonvertebrate genomicsWe provide to
Page 22 and 23: gMolecular atlasLife scientists are
Page 24 and 25: Functional genomicsThe Functional G
Page 26 and 27: Functional genomics productionOur t
Page 28 and 29: Functional genomics developmentOur
Page 30 and 31: PProteins and protein familiesUniPr
Page 32 and 33: UniProt contentOne of the central a
Page 34 and 35: UniProt developmentOur team provide
Page 36 and 37: InterProOur team co-ordinates the I
Page 38 and 39: sMolecular and cellular structureUn
Page 40 and 41: Protein Data Bank in EuropeThe majo
Page 42 and 43: PDBe content and integrationOur goa
Page 44 and 45: PDBe databases and servicesOur team
Page 46 and 47: yMolecular systemsThe genes and gen
Page 48 and 49: Proteomics servicesThe Proteomics S
Page 50 and 51: Chemical biologyThe importance of s
Page 52 and 53: ChEMBLThe ChEMBL team develops and
Page 54 and 55: Cheminformatics and metabolismOur t
Page 56 and 57: cCross-domain toolsand resourcesSci
Page 58 and 59: Literature servicesScientific liter
Page 60 and 61:
Research2012 has seen the further t
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Bertone groupPluripotency, reprogra
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Birney groupNucleotide dataDNA sequ
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Enright groupFunctional genomics an
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Goldman groupEvolutionary tools for
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Le Novère groupComputational syste
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Luscombe groupGenomics and regulato
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Marioni groupComputational and evol
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Rebholz groupPhenotypes and multili
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Saez-Rodriguez groupSystems biomedi
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Thornton groupProteins: structure,
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The EMBL International PhDProgramme
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SupportOur support teams provide fo
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T TrainingAs part of EMBL-EBI’s m
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IIndustry programmeSince 1996 the I
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NExternal relationsAs a European In
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sExternal servicesOur team manages
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SSystems and networkingOur team man
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q AdministrationThe EMBL-EBI Admini
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Funding and resource allocationDesp
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Growth of core resourcesIn 2012 the
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CollaborationsEMBL-EBI is a highly
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Staff growthOur organisational stru
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Scientific advisory commiteesEMBL S
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The International Nucleotide Sequen
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EMDataBank Advisory Committee• Jo
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Major database collaborationsARRAYE
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THE GENE ONTOLOGY CONSORTIUM• Agb
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REACTOME• New York University Med
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Publications in 2012In 2012, EMBL-E
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Doreleijers, J. F., Vranken W. F.,
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Kruger, F. A., Rostom R. and Overin
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Sahakyan, Aleksandr B., Cavalli And
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EMBL - European Bioinformatics Inst
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EMBL-EBI Annual Scientific Report 2012

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