List of Publications Professor Klaus Schulten Departments of ...

[406] Peter L. Freddolino, Anton S. Arkhipov, Steven B. Larson, Alexander McPherson, and Klaus Schulten.
Molecular dynamics simulations of the complete satellite tobacco mosaic virus. Structure, 14:437–449,
2006.
[407] Maria E. Gracheva, Anlin Xiong, Jean-Pierre Leburton, Aleksei Aksimentiev, Klaus Schulten, and
Gregory Timp. Simulation of the electric response of DNA translocation through a semiconductor
nanopore-capacitor. Nanotechnology, 17:622–633, 2006.
[408] Deyu Lu, Aleksei Aksimentiev, Amy Y. Shih, Eduardo Cruz-Chu, Peter L. Freddolino, Anton Arkhipov,
and Klaus Schulten. The role of molecular modeling in bionanotechnology. Phys. Biol., 3:S40–S53,
2006.
[409] Eric H. Lee, Mu Gao, Nikos Pinotsis, Matthias Wilmanns, and Klaus Schulten. Mechanical strength
of the titin Z1Z2/telethonin complex. Structure, 14:497–509, 2006.
[410] James Gumbart and Klaus Schulten. Molecular dynamics studies of the archaeal translocon. Biophys.
J., 90:2356–2367, 2006.
[411] Alexander Balaeff, L. Mahadevan, and Klaus Schulten. Modeling DNA loops using the theory of
elasticity. Phys. Rev. E, 73:031919, 2006. (23 pages).
[412] Mu Gao and Klaus Schulten. Onset of anthrax toxin pore formation. Biophys. J., 90:3267–3279, 2006.
[413] Marcos Sotomayor, Trudy A. van der Straaten, Umberto Ravaioli, and Klaus Schulten. Electrostatic
properties of the mechanosensitive channel of small conductance MscS. Biophys. J., 90:3496–3510,
2006.
[414] Eduardo R. Cruz-Chu, Aleksei Aksimentiev, and Klaus Schulten. Water-silica force field for simulating
nanodevices. J. Phys. Chem. B, 110:21497–21508, 2006.
[415] Jordi Cohen, Anton Arkhipov, Rosemary Braun, and Klaus Schulten. Imaging the migration pathways
for O2, CO, NO, and Xe inside myoglobin. Biophys. J., 91:1844–1857, 2006.
[416] Grischa Raphael Meyer, Justin Gullingsrud, Klaus Schulten, and Boris Martinac. Molecular dynamics
study of MscL interactions with a curved lipid bilayer. Biophys. J., 91:1630–1637, 2006.
[417] Anton Arkhipov, Peter L. Freddolino, Katsumi Imada, Keiichi Namba, and Klaus Schulten. Coarsegrained
molecular dynamics simulations of a rotating bacterial flagellum. Biophys. J., 91:4589–4597,
2006.
[418] Markus Dittrich, Jin Yu, and Klaus Schulten. PcrA helicase, a molecular motor studied from the
electronic to the functional level. Topics in Current Chemistry, 268:319–347, 2006.
[419] Mu Gao, Marcos Sotomayor, Elizabeth Villa, Eric Lee, and Klaus Schulten. Molecular mechanisms of
cellular mechanics. Phys. Chem. Chem. Phys., 8:3692–3706, 2006.
[420] Jin Yu, Taekjip Ha, and Klaus Schulten. Structure-based model of the stepping motor of PcrA helicase.
Biophys. J., 91:2097–2114, 2006.
[421] Michael Hoffmann, Marius Wanko, Paul Strodel, Peter H. Koenig, Thomas Frauenheim, Klaus Schulten,
Walter Thiel, Emad Tajkhorshid, and Marcus Elstner. Color tuning in rhodopsins: the mechanism
for the spectral shift between bacteriorhodopsin and sensory rhodopsin II. J. Am. Chem. Soc.,
128:10808–10818, 2006.
[422] Markus Dittrich and Klaus Schulten. PcrA helicase, a prototype ATP-driven molecular motor. Structure,
14:1345–1353, 2006.
[423] Jerome Henin, Klaus Schulten, and Christophe Chipot. Conformational equilibrium in alanine-rich
peptides probed by reversible stretching simulations. J. Phys. Chem. B, 110:16718–16723, 2006.