List of Publications Professor Klaus Schulten Departments of ...

[539] John E. Stone, David J. Hardy, Jan Saam, Kirby L. Vandivort, and Klaus Schulten. GPU-accelerated
computation and interactive display of molecular orbitals. In Wen-mei Hwu, editor, GPU Computing
Gems, chapter 1, pp. 5–18. Morgan Kaufmann Publishers, 2011.
[540] David J. Hardy, John E. Stone, Kirby L. Vandivort, David Gohara, Christopher Rodrigues, and Klaus
Schulten. Fast molecular electrostatics algorithms on GPUs. In Wen-mei Hwu, editor, GPU Computing
Gems, chapter 4, pp. 43–58. Morgan Kaufmann Publishers, 2011.
[541] Leonardo G. Trabuco, Eduard Schreiner, James Gumbart, Jen Hsin, Elizabeth Villa, and Klaus Schulten.
Applications of the molecular dynamics flexible fitting method. J. Struct. Biol., 173:420–427,
2011.
[542] Carsten Olbrich, Johan Strümpfer, Klaus Schulten, and Ulrich Kleinekathoefer. Quest for spatially
correlated fluctuations in the FMO light-harvesting complex. J. Phys. Chem. B, 115:758–764, 2011.
[543] James Gumbart, Eduard Schreiner, Leonardo G. Trabuco, Kwok-Yan Chan, and Klaus Schulten.
Viewing the mechanisms of translation through the computational microscope. In Joachim Frank,
editor, Molecular Machines in Biology, chapter 8, pp. 142–157. Cambridge University Press, 2011.
[544] Johan Strümpfer, Jen Hsin, Melih Sener, Danielle Chandler, and Klaus Schulten. The light-harvesting
apparatus in purple photosynthetic bacteria, introduction to a quantum biological device. In Benoit
Roux, editor, Molecular Machines, chapter 2, pp. 19–48. World Scientific Press, 2011.
[545] Jen Hsin, Johan Strümpfer, Eric H. Lee, and Klaus Schulten. Molecular origin of the hierarchical
elasticity of titin: simulation, experiment and theory. Annu. Rev. Biophys., 40:187–203, 2011.
[546] Wen Li, Leonardo G. Trabuco, Klaus Schulten, and Joachim Frank. Molecular dynamics of EF-G
during translocation. Proteins: Struct., Func., Bioinf., 79:1478–1486, 2011.
[547] Wei Jiang, David Hardy, James Phillips, Alex MacKerell, Klaus Schulten, and Benoit Roux. Highperformance
scalable molecular dynamics simulations of a polarizable force field based on classical
Drude oscillators in NAMD. J. Phys. Chem. Lett., 2:87–92, 2011.
[548] Wei Chen, Jizhong Lou, Jen Hsin, Klaus Schulten, Stephen C. Harvey, and Cheng Zhu. Molecular
dynamics simulations of forced unbending of integrin αV β3. PLoS Comput. Biol., 7(2):e1001086, 2011.
[549] Melih Sener, Johan Strümpfer, Jen Hsin, Danielle Chandler, Simon Scheuring, C. Neil Hunter, and
Klaus Schulten. Förster energy transfer theory as reflected in the structures of photosynthetic light
harvesting systems. ChemPhysChem, 12:518–531, 2011.
[550] James Gumbart, Christophe Chipot, and Klaus Schulten. Free-energy cost for translocon-assisted
insertion of membrane proteins. Proc. Natl. Acad. Sci. USA, 108:3596–3601, 2011.
[551] Jen Hsin and Klaus Schulten. Improved resolution of tertiary structure elasticity in muscle protein.
Biophys. J., 100:L22–L24, 2011.
[552] Gregory Timp, Utkur Mirsaidov, Winston Timp, Jiwook Shim, Deqiang Wang, Valentin Dimitrov,
Jan Scrimgeour, Chunchen Lin, Jeffrey Comer, Anthony Ho, Xueqing Zou, Aleksei Aksimentiev, and
Klaus Schulten. 3rd generation DNA sequencing with a nanopore. In Samir M. Iqbal and Rashid
Bashir, editors, Nanopores: Sensing and Fundamental Biological Interactions, chapter 12, pp. 287–
312. Springer, Berlin, 2011.
[553] Jens Frauenfeld, James Gumbart, Eli O. van der Sluis, Soledad Funes, Marco Gartmann, Birgitta Beatrix,
Thorsten Mielke, Otto Berninghausen, Thomas Becker, Klaus Schulten, and Roland Beckmann.
Cryo-EM structure of the ribosome-SecYE complex in the membrane environment. Nat. Struct. Mol.
Biol., 18:614–621, 2011.