List of Publications Professor Klaus Schulten Departments of ...

[458] Jerome Henin, Emad Tajkhorshid, Klaus Schulten, and Christophe Chipot. Diffusion of glycerol
through Escherichia coli aquaglyceroporin GlpF. Biophys. J., 94:832–839, 2008.
[459] Klaus Schulten, James C. Phillips, Laxmikant V. Kalé, and Abhinav Bhatele. Biomolecular modeling
in the era of petascale computing. In David Bader, editor, Petascale Computing: Algorithms and
Applications, pp. 165–181. Chapman and Hall/CRC Press, Taylor and Francis Group, New York,
2008.
[460] Jordi Cohen, Kenneth W. Olsen, and Klaus Schulten. Finding gas migration pathways in proteins
using implicit ligand sampling. In Robert K. Poole, editor, Globins and other NO-reactive Proteins
in Microbes, Plants and Invertebrates, volume 437 of Methods in Enzymology, pp. 437–455. Elsevier,
2008.
[461] Peter L. Freddolino, Anton Arkhipov, Amy Y. Shih, Ying Yin, Zhongzhou Chen, and Klaus Schulten.
Application of residue-based and shape-based coarse graining to biomolecular simulations. In Gregory
A. Voth, editor, Coarse-Graining of Condensed Phase and Biomolecular Systems, chapter 20, pp.
299–315. Chapman and Hall/CRC Press, Taylor and Francis Group, 2008.
[462] Amy Y. Shih, Peter L. Freddolino, Anton Arkhipov, Stephen G. Sligar, and Klaus Schulten. Molecular
modeling of the structural properties and formation of high-density lipoprotein particles. In Scott Feller,
editor, Current Topics in Membranes: Computational Modeling of Membrane Bilayers, chapter 11, pp.
313–342. Elsevier, 2008.
[463] Valeria Vasquez, Marcos Sotomayor, D. Marien Cortes, Benoit Roux, Klaus Schulten, and Eduardo
Perozo. Three dimensional architecture of membrane-embedded MscS in the closed conformation.
J. Mol. Biol., 378:55–70, 2008.
[464] Christophe Chipot and Klaus Schulten. Understanding structure and function of membrane proteins
using free energy calculations. In Eva Pebay-Peyroula, editor, Biophysical analysis of membrane proteins.
Investigating structure and function, pp. 187–211. Wiley, Weinheim, 2008.
[465] Bernard Lim, Eric H. Lee, Marcos Sotomayor, and Klaus Schulten. Molecular basis of fibrin clot
elasticity. Structure, 16:449–459, 2008.
[466] Aruna Rajan, Michael S. Strano, Daniel A. Heller, Tobias Hertel, and Klaus Schulten. Length dependent
optical effects in single walled carbon nanotubes. J. Phys. Chem. B, 112:6211–6213, 2008.
[467] Marcos Sotomayor and Klaus Schulten. The allosteric role of the Ca ++ switch in adhesion and elasticity
of C-cadherin. Biophys. J., 94:4621–4633, 2008.
[468] Christopher I. Rodrigues, David J. Hardy, John E. Stone, Klaus Schulten, and Wen-mei W. Hwu.
GPU acceleration of cutoff pair potentials for molecular modeling applications. In CF’08: Proceedings
of the 2008 conference on Computing Frontiers, pp. 273–282, New York, NY, USA, 2008. ACM.
[469] Peter L. Freddolino, Feng Liu, Martin Gruebele, and Klaus Schulten. Ten-microsecond molecular
dynamics simulation of a fast-folding WW domain. Biophys. J., 94:L75–L77, 2008.
[470] Basak Isin, Klaus Schulten, Emad Tajkhorshid, and Ivet Bahar. Mechanism of signal propagation
upon retinal isomerization: Insights from molecular dynamics simulations of rhodopsin restrained by
normal modes. Biophys. J., 95:789–803, 2008.
[471] Melih K. S¸ener and Klaus Schulten. From atomic-level structure to supramolecular organization in the
photosynthetic unit of purple bacteria. In C. Neil Hunter, Fevzi Daldal, Marion C. Thurnauer, and
J. Thomas Beatty, editors, The Purple Phototrophic Bacteria, volume 28 of Advances in Photosynthesis
and Respiration, pp. 275–294. Springer, 2008.
[472] Amy Y. Shih, Stephen G. Sligar, and Klaus Schulten. Molecular models need to be tested: the case of
a solar flares discoidal HDL model. Biophys. J., 94:L87–L89, 2008.