List of Publications Professor Klaus Schulten Departments of ...

[571] Kwok-Yan Chan, James Gumbart, Ryan McGreevy, Jean M. Watermeyer, B. Trevor Sewell, and Klaus
Schulten. Symmetry-restrained flexible fitting for symmetric EM maps. Structure, 19:1211–1218, 2011.
[572] Shigehiko Hayashi and Klaus Schulten. Quantum biology of retinal. In Masoud Mohseni, Yasser Omar,
Greg Engel, and Martin B. Plenio, editors, Quantum Effects in Biology. Cambridge University Press,
2012. To be published.
[573] Ilia A. Solov’yov, P. J. Hore, Thorsten Ritz, and Klaus Schulten. A chemical compass for bird navigation.
In Masoud Mohseni, Yasser Omar, Greg Engel, and Martin B. Plenio, editors, Quantum Effects
in Biology, chapter 10. Cambridge University Press, 2012. To be published.
[574] Xueqing Zou, Wen Ma, Ilia Solov’yov, Christophe Chipot, and Klaus Schulten. Recognition of methylated
DNA through methyl-CpG binding domain proteins. Nucleic Acids Res., 40:2747–2758, 2012.
[575] Fatemeh Khalili-Araghi, Emad Tajkhorshid, Benoit Roux, and Klaus Schulten. Molecular dynamics
investigation of the ω current in the Kv1.2 voltage sensor domains. Biophys. J., 102:258–267, 2012.
[576] Johan Strumpfer, Melih Sener, and Klaus Schulten. How quantum coherence assists photosynthetic
light harvesting. J. Phys. Chem. Lett., 3:536–542, 2012.
[577] Ilia A. Solov’yov and Klaus Schulten. Reaction kinetics and mechanism of magnetic field effects in
cryptochrome. J. Phys. Chem. B, 116:1089–1099, 2012.
[578] Xabier Agirrezabala, Hstau Liao, Eduard Schreiner, Jie Fu, Rodrigo Ortiz-Meoz, Klaus Schulten,
Rachel Green, and Joachim Frank. Structural characterization of mRNA-tRNA translocation intermediates.
Proc. Natl. Acad. Sci. USA, 109:6094–6099, 2012.
[579] Kwok-Yan Chan, Leonardo G. Trabuco, Eduard Schreiner, and Klaus Schulten. Cryo-electron microscopy
modeling by the molecular dynamics flexible fitting method. Biopolymers, 97:678–686, 2012.
[580] Michael Krone, John E. Stone, Thomas Ertl, and Klaus Schulten. Fast visualization of Gaussian
density surfaces for molecular dynamics and particle system trajectories. In EuroVis - Short Papers
2012, pp. 67–71, 2012. DOI: 10.2312/PE/EuroVisShort/EuroVisShort2012/067-071.
[581] Yanxin Liu, Johan Strümpfer, Peter L. Freddolino, Martin Gruebele, and Klaus Schulten. Structural
characterization of λ-repressor folding from all-atom molecular dynamics simulations. J. Phys. Chem.
Lett., 3:1117–1123, 2012.
[582] Whasil Lee, Johan Strümpfer, Vann Bennett, Klaus Schulten, and Piotr E. Marszalek. Mutation of
conserved histidines alters the tertiary structure and nanomechanics of consensus ankyrin repeats.
J. Biol. Chem., 287:19115–19121, 2012.
[583] Mortaza Aghtar, Jörg Liebers, Johan Strümpfer, Klaus Schulten, and Ulrich Kleinekathöfer. Juxtaposing
density matrix and classical path-based wave packet dynamics. J. Chem. Phys., 136:214101,
2012.
[584] Christopher Harrison and Klaus Schulten. Quantum and classical dynamics simulations of ATP hydrolysis
in solution. J. Chem. Theor. Comp., 8:2328–2335, 2012.
[585] James Gumbart, Eduard Schreiner, Daniel N. Wilson, Roland Beckmann, and Klaus Schulten. Mechanisms
of SecM-mediated stalling in the ribosome. Biophys. J., 103:331–341, 2012.
[586] Martin van Eijk, Michael J. Rynkiewicz, Mitchell R. White, Kevan L. Hartshorn, Xueqing Zou, Klaus
Schulten, Dong Luo, Erika C. Crouch, Tanya M. Cafarella, James F. Head, Henk P. Haagsman, and
Barbara A. Seaton. Unique sugar-binding site mediates the distinct anti-influenza activity of pig
surfactant protein D. J. Biol. Chem., 287:26666–26677, 2012.
[587] Johan Strümpfer and Klaus Schulten. Open quantum dynamics calculations with the hierarchy equations
of motion on parallel computers. J. Chem. Theor. Comp., 8:2808–2816, 2012.