A proteomic view of probiotic Lactobacillus rhamnosus GG

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Review of the Literature Table 2. cont. 18 Bile stress Acid stress Heat stress Protein Lactobacillus Bifi dob. Propionibact. Lactobacillus Bif. Propionib. Lactob. Prop. Classifi cation Name Function 1* 2 3 4 5 6 7 8 9 10 11 12 13 14 7 9 15 16 9 tRNA AsnC Asparagine-tRNA ligase x CysS Cysteinyl-tRNA synthetase x GatA Glutamyl-tRNA (Gln) amidotransferase subunit A x IleS Isoleucyl-tRNA synthetase x PheS Phenyl-alanyl-tRNA syntethase alpha chain x ProS Prolyl-tRNA synthetase x − Probable tRNA-methyltransferase x Transcription NusG Probable transcription antitermination protein x RpoA DNA-directed RNA polymerase alpha chain x RpoC DNA-directed RNA polymerase beta prime chain x RpoD RNA polymerase sigma factor rpoD x − RNA polymerase subunit x Others FusA Elongation factor G x x NusA N utilization substance homolog x Tuf Elongation factor Tu x x x Prf Peptide chain release factor x − Transcription elongation factor x Other functions Proteolytic system Def Peptide deformylase x OppD Oligopeptide transport ATP-binding protein x PepP Aminopeptidase P x − ABC-type polar amino acid transport system x − Putative dipeptidyl-peptidase x − Trypsin-like serine protease x Transport CbiO Cobalt import ATP binding protein x x ATP binding protein of ABC transporter for MsiK sugars x − Multidrug resistance ABC transporter x − Sugar transport ATP binding protein x
Bile stress Acid stress Heat stress Protein Lactobacillus Bifi dob. Propionibact. Lactobacillus Bif. Propionib. Lactob. Prop. Classifi cation Name Function 1* 2 3 4 5 6 7 8 9 10 11 12 13 14 7 9 15 16 9 DNA DnaA Chromosomal replication initiator protein DnaA x RepB Primase x x ScpA Segregation and condensation protein A x Ssb Single-strand binding protein x Two-component systems − Putative two-component sensor kinase x − Response regulator of two-component system x − Two-component system regulatory protein x Miscellaneous GlgP Glycogen phosphorylase x Hfl X GTPase x − Acetyltransferase, GNAT family x − Dioxygenase x − Ferrochelatase x x − Predicted hydrolase of HD superfamily x − Putative alternative sigma factor x − Putative NADH-fl avin reductase x − Sensory rhodopsin II transducer x * References: 1, Burns et al., 2010; 2, Hamon et al., 2011; 3, Lee et al., 2008a; 4, Wu et al., 2010; 5, Sánchez et al., 2005; 6, Sánchez et al., 2007b; 7, Jan et al., 2002; 8, Leverrier et al., 2003; 9, Leverrier et al., 2004; 10, Lee et al., 2008b; 11, Lee & Pi, 2010; 12, Wu et al., 2011; 13, Sánchez et al., 2007a; 14, Jan et al., 2001; 15, Prasad et al., 2003; 16, Suokko et al., 2008. Review of the Literature 19
Page 1 and 2: Department of Veterinary Bioscience
Page 4 and 5: CONTENTS Abstract List of abbreviat
Page 6 and 7: ABSTRACT Lactobacillus rhamnosus GG
Page 8 and 9: LIST OF ABBREVIATIONS 2-D DIGE two-
Page 11 and 12: 1. REVIEW OF THE LITERATURE 1.1. Pr
Page 13 and 14: ingestion of Lactobacillus gasseri
Page 15 and 16: 1.1.3. Bifi dobacteria and propioni
Page 17 and 18: Table 1. Proteomic studies of probi
Page 19 and 20: Topic Separation and detection meth
Page 21 and 22: 1.3.1.2. Comparison of growth phase
Page 23 and 24: ecause of the complex nutrient requ
Page 25 and 26: Bile stress Acid stress Heat stress
Page 27: Bile stress Acid stress Heat stress
Page 31 and 32: on the metabolic processes of probi
Page 33 and 34: esistant mutant strain was also abl
Page 35 and 36: Glyceraldehyde-3-phosphate dehydrog
Page 37 and 38: nine proteins that are potentially
Page 39 and 40: down-regulated the chemotaxis syste
Page 41 and 42: 3. MATERIALS AND METHODS All materi
Page 43 and 44: μg of RNA was reverse transcribed
Page 45 and 46: L. rhamnosus GG in MRS medium, and
Page 47 and 48: (EPS) biosynthesis and D-alanylatio
Page 49 and 50: that exports protons from the cell
Page 51 and 52: Results and Discussion 41
Page 53 and 54: 5. CONCLUDING REMARKS AND FUTURE PR
Page 55 and 56: 6. ACKNOWLEDGEMENTS Acknowledgement
Page 57 and 58: Castaldo C., Vastano V., Siciliano
Page 59 and 60: Hickson M., D’Souza A. L., Muthu
Page 61 and 62: Lee K. & Pi K. (2010) Effect of tra
Page 63 and 64: Adaptation and response of Bifidoba
Page 65: Wu R., Wang W., Yu D., Zhang W., Li

A proteomic view of probiotic Lactobacillus rhamnosus GG

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