Faculty of Science - Mahidol University
Faculty of Science - Mahidol University
Faculty of Science - Mahidol University
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hornbills. Subsequently, we increase breeding success and<br />
conservation awareness through nest cavities improvements, ceased<br />
poaching <strong>of</strong> hornbill chicks and getting community involvement in<br />
hornbill conservation. Currently supported by BIOTEC, we are<br />
investigating the characteristics <strong>of</strong> Phylogenetic <strong>of</strong> Thai hornbills<br />
and genetic variations <strong>of</strong> hornbills in fragmented forest landscapes<br />
and determining their population and habitat status throughout<br />
Thailand.<br />
(Oral Presentation (Special Topic) at Department <strong>of</strong> Biotechnology,<br />
<strong>Faculty</strong> <strong>of</strong> <strong>Science</strong>, <strong>Mahidol</strong> <strong>University</strong>, Bangkok, 4 August 2005.<br />
Supported by Thailand Hornbill Project, Hornbill Research<br />
Foundation and The National Center for Genetic Engineering and<br />
Biotechnology (BIOTEC)<br />
STUDY ON THE POLYMORPHISM OF MULTIPLE<br />
LOCI OF VARIABLE NUMBER OF TANDEM<br />
REPEATS IN MYCOBACTERIUM TUBERCULOSIS<br />
(NO. 818)<br />
1 Nat Smittipat; 1 Pamaree Billamas; 2 Manee Palittapongarnpim;<br />
2 Arunee Thong-On; 2 Mansuet M. Temu; 3 Prathep<br />
Thanakijcharoen; 3 Opart Karnkawinpong; 2 Prasit<br />
Palittapongarnpim<br />
1 National Center for Genetic Engineering and Biotechnology,<br />
Phatumthani, 2 Department <strong>of</strong> Microbiology, <strong>Faculty</strong> <strong>of</strong> <strong>Science</strong>,<br />
<strong>Mahidol</strong> <strong>University</strong>, Bangkok, and 3 Amnat Charoen Hospital,<br />
Amnat Charoen, Thailand. E-mail: Prasit@biotech.or.th<br />
Key words : VNTR, polymorphisms, Mycobacterium Tuberculosis<br />
Genotyping based on variable number <strong>of</strong> tandem repeats<br />
(VNTR) is currently a very promising tool for studying the molecular<br />
epidemiology and phylogeny <strong>of</strong> M. tuberculosis. Here, we<br />
investigated the polymorphisms <strong>of</strong> 48 loci <strong>of</strong> direct or tandem repeats<br />
in M. tuberculosis previously identified by our group. Thirty-nine<br />
loci including nine novel ones are polymorphic. Ten VNTR loci<br />
had high allelic diversity (Nei’s diversity values ≥0.6) and<br />
subsequently were used as the representative VNTR-typing set for<br />
comparison to IS6110-based restriction fragment length<br />
polymorphism (RFLP) typing. The 10-loci VNTR set, potentially<br />
providing >2×10 9 allele combinations, obviously showed the<br />
discriminating capacity over IS6110-RFLP method for M.<br />
tuberculosis isolates with less than 6 IS6110-hybridized bands<br />
whereas it had equivalent resolution to the IS6110-RFLP for the<br />
isolates having >5 IS6110 bands. Allelic diversity <strong>of</strong> many VNTR<br />
loci varied in each IS6110 type. Genetic relationships inferred from<br />
the 10-VNTR set supported the notion that M. tuberculosis may be<br />
evolved from two different lineages (high and low-IS6110 copy). In<br />
addition, we found that many VNTR loci had significant<br />
relationships to each other. These relationships could cause a<br />
restriction <strong>of</strong> the VNTR-typing discriminating capability to some<br />
extent. Our results suggested that VNTR-PCR typing is practically<br />
useful for application to molecular epidemiological and phylogenetic<br />
studies <strong>of</strong> M. tuberculosis. The discriminating power <strong>of</strong> VNTRtyping<br />
system could still be enhanced by the supplementation <strong>of</strong> an<br />
extra number <strong>of</strong> (new) VNTR loci.<br />
(Journal <strong>of</strong> Clinical Microbiology 43 (10), (2005): (Accepted).<br />
<strong>Faculty</strong> <strong>of</strong> <strong>Science</strong><br />
RESTRICTION FRAGMENT LENGTH POLY-<br />
MORPHISM STUDY OF NATION-WIDE SAMPLES<br />
OF MYCOBACTERIUM TUBERCULOSIS IN<br />
THAILAND, 1997-1998 (NO. 819)<br />
1 Dhanida Rienthong; 2 Pravech Ajawatanawong; 1 Somsak<br />
Rienthong; 3 Angkana Chaiprasert ; 1 Saijai Smithtikarn; A<br />
Pasakorn; 4 Prasit Palittapongarnpim.<br />
1 Tuberculosis Division, Department <strong>of</strong> Disease Control, Bangkok,<br />
2 National Center for Genetic Engineering and Biotechnology,<br />
Phatumthani, 3 Department <strong>of</strong> Microbiology, <strong>Faculty</strong> <strong>of</strong><br />
Medicine, Siriraj Hospital and 4 Department <strong>of</strong> Microbiology,<br />
<strong>Faculty</strong> <strong>of</strong> <strong>Science</strong>, <strong>Mahidol</strong> <strong>University</strong>, Bangkok, Thailand. Email:<br />
Prasit@biotech.or.th<br />
Key words: RFLP, recent transmission, Mycobacterium<br />
tuberculosis<br />
Setting : During 1997-1998, a national anti-tuberculosis<br />
drug resistance surveillance was conducted in Thailand as a part <strong>of</strong><br />
a global project.<br />
Objective : To evaluate the IS6110-hybridization patterns<br />
and the level <strong>of</strong> clustering, which was expected to be low due to the<br />
short duration <strong>of</strong> the sample collection.<br />
Design : 828 bacterial isolates were available for<br />
fingerprinting by standard IS6110 hybridization.<br />
Results : The RFLP patterns varied with geographic<br />
locations, ages <strong>of</strong> the patients, and resistance to rifampin and<br />
streptomycin. The Beijing strains were more common among<br />
younger patients and their prevalence appeared to decrease with the<br />
distance from Bangkok, while the opposite was true for the singlebanded<br />
isolates. Excluding isolates containing 5 or less copies <strong>of</strong><br />
IS6110, 26.4 % were clustered. The clustering was more common<br />
among female. The clustered isolates were sometimes from different<br />
provinces and, if resistant to drugs, usually possessed different<br />
resistance pr<strong>of</strong>iles.<br />
Conclusions : The results raised a question <strong>of</strong> the validity<br />
<strong>of</strong> inferring the recent transmission from the clustering <strong>of</strong> IS 6110hybridization<br />
patterns in some settings in Thailand. Evaluating the<br />
level <strong>of</strong> recent transmission in a nation-wide study in a country with<br />
high incidence <strong>of</strong> tuberculosis should be done cautiously.<br />
(International Journal <strong>of</strong> Tuberculosis Lung Disease 9(5), (2005):<br />
576-581.)<br />
BURKHOLDERIA PSEUDOMALLEI INVASION<br />
AND ACTIVATION OF EPITHELIAL CELLS<br />
REQUIRES ACTIVATION OF P38 MITOGEN-<br />
ACTIVATED PROTEIN KINASE (NO. 820)<br />
P. Utaisincharoen 1 , S. Arjcharoen 1 , I. Lengwehasatit 2 , K.<br />
Limposuwan 1 , S. Sirisinha 1<br />
1 Department <strong>of</strong> Microbiology, <strong>Faculty</strong> <strong>of</strong> <strong>Science</strong>, <strong>Mahidol</strong><br />
<strong>University</strong>; 2 Department <strong>of</strong> Biotechnology, <strong>Faculty</strong> <strong>of</strong> <strong>Science</strong>,<br />
<strong>Mahidol</strong> <strong>University</strong>. E-mail: scput@mahidol.ac.th<br />
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