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Mutations in the mitochondrial thioredoxin reductase gene TXNRD2 ...

Mutations in the mitochondrial thioredoxin reductase gene TXNRD2 ...

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<strong>TXNRD2</strong> and dilated cardiomyopathy 1123<br />

<strong>the</strong>se samples us<strong>in</strong>g <strong>the</strong> commercially available QIAamp DNA Blood<br />

M<strong>in</strong>i Kit (Qiagen, Hilden, Germany).<br />

A randomly selected subset of 96 patients of <strong>the</strong> entire DCM study<br />

population was subjected to capillary Sanger sequenc<strong>in</strong>g. Primers,<br />

flank<strong>in</strong>g <strong>the</strong> 17 cod<strong>in</strong>g exons plus <strong>the</strong> 3 ′ SECIS (exon 18) element of<br />

<strong>TXNRD2</strong>, were designed us<strong>in</strong>g <strong>the</strong> ExonPrimer software based on<br />

Primer3 (http://primer3.sourceforge.net/) accord<strong>in</strong>g to <strong>the</strong> human<br />

genome build hg17. Amplifications were conducted follow<strong>in</strong>g standard<br />

polymerase cha<strong>in</strong> reaction (PCR) protocol procedures. PCR products<br />

were purified with both Exonuclease I and Shrimp alkal<strong>in</strong>e phosphatase<br />

(Fermentas, St Leon-Rot, Germany) to digest <strong>the</strong> rema<strong>in</strong><strong>in</strong>g primers<br />

and to reduce <strong>the</strong> rema<strong>in</strong><strong>in</strong>g dNTPs. Subsequent cycle sequenc<strong>in</strong>g<br />

was performed <strong>in</strong>clud<strong>in</strong>g <strong>the</strong> respective forward and reverse primers<br />

and BigDye-Term<strong>in</strong>ator 3.1 (Qiagen). Thereafter, products were<br />

cleaned by DyeEx (Qiagen). Both forward and reverse strands were<br />

sequenced for all 18 <strong>TXNRD2</strong> exons <strong>in</strong> <strong>the</strong> population of 96 patients.<br />

Sequenc<strong>in</strong>g was performed with an ABI 3730 Automated Sequencer<br />

(Applied Biosystems, Foster City, CA, USA) accord<strong>in</strong>g to <strong>the</strong> manufacturer’s<br />

recommendations. Results of sequenc<strong>in</strong>g were analysed with<br />

Mutation Surveyor v3.00 (Soft<strong>gene</strong>tics, State College, PA, USA).<br />

Matrix-assisted laser desorption/<br />

ionization-time-of-flight mass spectrometry<br />

genotyp<strong>in</strong>g<br />

All synonymous and non-synonymous exonic sequence variants identified<br />

by direct sequenc<strong>in</strong>g <strong>in</strong> <strong>the</strong> population of 96 DCM patients were<br />

subsequently genotyped <strong>in</strong> all DCM patients (n ¼ 227) and <strong>in</strong> <strong>the</strong><br />

KORA controls (n ¼ 683) us<strong>in</strong>g matrix-assisted laser desorption/<br />

ionization-time-of-flight mass spectrometry (MALDI-TOF, Autoflex<br />

HT, Sequenom, San Diego, CA, USA) <strong>in</strong> a 384-well format us<strong>in</strong>g <strong>the</strong><br />

standard protocols supplied by <strong>the</strong> manufacturer as described previously.<br />

22 Genotype-analyses were performed with <strong>the</strong> Sequenom<br />

MassARRAY Typer Analyzer software v3.4.0.6 (Sequenom).<br />

Clon<strong>in</strong>g of full-length wild-type Txnrd2,<br />

<strong>gene</strong>ration of both Txnrd2 mutants, and<br />

clon<strong>in</strong>g <strong>in</strong>to <strong>the</strong> lentiviral expression system<br />

Vector pGEM-Teasy-Txnrd2 was a k<strong>in</strong>d gift from Dr Antonio Miranda-<br />

Vizuete (Universidad Pablo de Olavide, Sevilla, Spa<strong>in</strong>). The vector conta<strong>in</strong>ed<br />

most parts of <strong>the</strong> 5 ′ region of mur<strong>in</strong>e Txnrd2 cDNA <strong>in</strong>clud<strong>in</strong>g<br />

<strong>the</strong> <strong>mitochondrial</strong> leader sequence; however, it lacked <strong>the</strong> 3 ′ UTR<br />

<strong>in</strong>clud<strong>in</strong>g <strong>the</strong> SECIS element. The miss<strong>in</strong>g sequence was amplified by<br />

PCR from mouse liver cDNA 18 with <strong>the</strong> primers Oligo-SECIS-BglII-for<br />

(5 ′ -TCTCAGAGATCTGAGAAGATGTGGATGGAAC-3 ′ ) and Oligo-<br />

SECIS-rev (5 ′ -GTTTGAACCCCTGGCATTTCTAGAGCACT-3 ′ ). The<br />

result<strong>in</strong>g 160 bp PCR product was purified, cloned <strong>in</strong>to pDrive via PaeI<br />

and BglII (Qiagen) and sequenced. The 3 ′ region of Txnrd2 was cloned<br />

via PaeI and BglII <strong>in</strong> pGEM-T-Easy-Txnrd2 (4702 bp), yield<strong>in</strong>g<br />

pGEM-T-Easy-Txnrd2 [<strong>in</strong> <strong>the</strong> follow<strong>in</strong>g referred to as wild-type (wt)].<br />

Site-directed PCR muta<strong>gene</strong>sis us<strong>in</strong>g pGEM-T-Easy-Txnrd2 as a template<br />

was performed to <strong>gene</strong>rate <strong>the</strong> Txnrd2-A59T and Txnrd2-G375R<br />

mutant forms. Codons were chosen accord<strong>in</strong>g to <strong>the</strong> highest mur<strong>in</strong>e<br />

codon usage of <strong>the</strong> respective am<strong>in</strong>o acid. The Ala codon (GCC) at<br />

position 175 of Txnrd2 <strong>gene</strong> was replaced with Thr (ACC) us<strong>in</strong>g <strong>the</strong><br />

primer pair Oligo-Txnrd2-A59T-for (5 ′ -AGCGGGAATCGATTATAA<br />

AGAT-3 ′ )/Oligo-Txnrd2-A59T-rev (5 ′ -GCCAGAAGCTTTCTTGCCT<br />

TGATAGC-3 ′ ); <strong>the</strong> Gly codon (GGG) at position 375 was mutated<br />

to Arg (AGG) with <strong>the</strong> primer pair Oligo-Txnrd2-G375R-for<br />

5 ′ -GCTATCAAGGCAAGAAAGCTTCTGGC-3 ′ )/Oligo-Txnrd2-G375Rrev<br />

(5 ′ -GCCAGAAGCTTTCTTGCCTTGATAGC-3 ′ ). <strong>Mutations</strong><br />

were verified by sequenc<strong>in</strong>g. All three forms were additionally<br />

tagged by a novel N-term<strong>in</strong>al TAPe (tandem aff<strong>in</strong>ity purification tag<br />

enhanced) 23 for detection of <strong>the</strong> tagged prote<strong>in</strong>s with a FLAG-specific<br />

antibody <strong>in</strong> immunocytochemistry.<br />

The lentiviral expression vector 442L1 17 was used for efficient <strong>gene</strong><br />

transfer and expression of wt Txnrd2 and <strong>the</strong> two mutant variants <strong>in</strong><br />

mouse embryonic fibroblasts (MEFs). XhoI and EcoRI were used<br />

for digestion of 442L1 (7870 bp) and pcDNA3-NTAPe-Txnrd2<br />

(1992 bp). Two shorter fragments carry<strong>in</strong>g <strong>the</strong> <strong>mitochondrial</strong><br />

NTAPe version of Txnrd2 were transferred <strong>in</strong>to <strong>the</strong> backbone of<br />

442L1, yield<strong>in</strong>g <strong>the</strong> different NTAPe <strong>mitochondrial</strong> Txnrd2 forms. In<br />

any of <strong>the</strong>se vectors, <strong>the</strong> VENUS nuclear membrane anchor prote<strong>in</strong><br />

<strong>in</strong> <strong>the</strong> bicistronic expression cassette was replaced by <strong>the</strong> puromyc<strong>in</strong><br />

acetyltransferase <strong>gene</strong> from <strong>the</strong> plasmid 442L1-NTAPe-Txnrd1 us<strong>in</strong>g<br />

BsrGI and SnaBI. This allowed stable expression of <strong>the</strong> various forms<br />

under puromyc<strong>in</strong> selection.<br />

Isolation, ma<strong>in</strong>tenance of mouse embryonic<br />

fibroblasts, and stable expression of <strong>the</strong><br />

different Txnrd2 forms <strong>in</strong> mouse embryonic<br />

fibroblasts<br />

Mouse embryonic fibroblasts were isolated from E12.5 Txnrd2 2/2 and<br />

Txnrd2 +/+ embryos and cultured <strong>in</strong> DMEM supplemented with 10%<br />

FCS, 1% glutam<strong>in</strong>e, 50 U/mL penicill<strong>in</strong> G, and 50 mg/mL streptomyc<strong>in</strong><br />

as described. For stable expression of wt Txnrd2, Txnrd2-A59T, and<br />

Txnrd2-G375R <strong>in</strong> wt and knockout cells <strong>in</strong> a bicistronic manner, a third<strong>gene</strong>ration<br />

lentiviral expression system was utilized as described. 17<br />

Transduced cells were selected with puromyc<strong>in</strong> (1 mg/mL) for at<br />

least 3 weeks prior to <strong>the</strong> start of <strong>the</strong> experiment.<br />

Immunoblott<strong>in</strong>g and production of an<br />

antibody directed aga<strong>in</strong>st mur<strong>in</strong>e Txnrd2<br />

Cell lysis, prote<strong>in</strong> determ<strong>in</strong>ation, SDS–PAGE, and prote<strong>in</strong> transfer<br />

were performed as described. 17 A peptide sequence next to <strong>the</strong> Cterm<strong>in</strong>us<br />

of Txnrd2 (VKLHISKRSGLEPTVTG) lack<strong>in</strong>g <strong>the</strong> three Cterm<strong>in</strong>al<br />

am<strong>in</strong>o acids Cys, Sec, and Gly was used to raise monoclonal<br />

antibodies aga<strong>in</strong>st Txnrd2 <strong>in</strong> rats. The peptide was obta<strong>in</strong>ed from<br />

Peptide Specialty Laboratories (Heidelberg, Germany) and was<br />

coupled to ovalbum<strong>in</strong> (OVA) or bov<strong>in</strong>e serum album<strong>in</strong> (BSA) at <strong>the</strong><br />

C-term<strong>in</strong>us (peptide-OVA/KLH).<br />

Immunocytochemistry and confocal<br />

microscopy<br />

Mouse embryonic fibroblasts were seeded onto cover slips <strong>in</strong> six-well<br />

cell culture dishes at ≏45 000 cells per well, cultured for 24 h <strong>in</strong> standard<br />

DMEM and <strong>the</strong>n fixed for 15 m<strong>in</strong> <strong>in</strong> 2% PFA solution. Cells were<br />

washed twice with PBS and <strong>the</strong>n permeabilized by treatment with<br />

0.15% Nonidet P-40 (NP-40) <strong>in</strong> PBS for 3 m<strong>in</strong>. Unspecific antibody<br />

b<strong>in</strong>d<strong>in</strong>g was m<strong>in</strong>imized by wash<strong>in</strong>g three times <strong>in</strong> PBS+ [PBS conta<strong>in</strong><strong>in</strong>g<br />

1% (w/v) BSA, 0.15% (w/v) glyc<strong>in</strong>e]. After <strong>in</strong>cubation of cells over night<br />

with <strong>the</strong> primary antibody (FLAG; Sigma-Aldrich, Deisenhofen,<br />

Germany; F1804 and Prx III; LabFrontier; LP-PA0030) at 48C <strong>in</strong> a<br />

humidified chamber, cells were washed with PBS, treated twice with<br />

PBS/NP-40 (0.15%), and transferred to PBS+. Cells were <strong>the</strong>n <strong>in</strong>cubated<br />

with fluorophore-labelled secondary antibodies (anti-Mouse-<br />

Alexa Fluor 568; A-10037 and anti-Rabbit-Alexa Fluor 488 A-21441;<br />

Invitrogen, Karlsruhe, Germany) <strong>in</strong> <strong>the</strong> dark for 45 m<strong>in</strong>. Cells were<br />

<strong>the</strong>n washed twice <strong>in</strong> PBS/NP-40 (0.15%) and twice <strong>in</strong> PBS. F<strong>in</strong>ally,<br />

DAPI solution (1:10 000 <strong>in</strong> PBS) was briefly added, and cells were<br />

washed twice <strong>in</strong> PBS and mounted <strong>in</strong> mount<strong>in</strong>g medium (Dako,<br />

Glostrup, Denmark). Cover slips were sealed with nail polish to<br />

prevent dry<strong>in</strong>g and <strong>the</strong>y were kept overnight at 48C <strong>in</strong> <strong>the</strong> dark.<br />

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