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Curr Genet (1998) 33: 70–76 © Springer-Verlag 1998<br />

ORIGINAL PAPER<br />

Paul R. J. Birch<br />

<strong>Targeted</strong> <strong>differential</strong> <strong>display</strong> <strong>of</strong> <strong>abundantly</strong> <strong>expressed</strong> <strong>sequences</strong><br />

from the basidiomycete Phanerochaete chrysosporium<br />

which contain regions coding for fungal cellulose-binding domains<br />

Received: 9 October / Accepted: 28 October 1997<br />

Abstract Cellulose-binding domains (CBDs) are present<br />

in the majority <strong>of</strong> fungal cellulases studied to-date. This<br />

work describes the use <strong>of</strong> targeted <strong>differential</strong> <strong>display</strong>, employing<br />

degenerate primers designed to anneal to variants<br />

<strong>of</strong> a region conserved in fungal CBDs, each in combination<br />

with an oligo-dT primer, to PCR-amplify cDNA <strong>sequences</strong><br />

containing regions coding for such domains from<br />

Phanerochaete chrysosporium. After growth on either Avicel<br />

or carboxymethyl cellulose (CMC), five distinct, <strong>abundantly</strong><br />

<strong>expressed</strong> cDNA <strong>sequences</strong> were obtained. Two <strong>of</strong><br />

these originated from transcripts <strong>of</strong> the previously characterised<br />

cbhI.1 and cbhI.2 genes, whereas three were from<br />

novel genes. One <strong>of</strong> the latter was isolated only after growth<br />

on CMC. No such <strong>sequences</strong> were obtained after growth<br />

on xylan, suggesting that the expression <strong>of</strong> <strong>sequences</strong> containing<br />

such regions is down-regulated on this substrate.<br />

The use <strong>of</strong> targeted <strong>differential</strong> <strong>display</strong> both for isolating<br />

novel <strong>sequences</strong> and for studying the expression <strong>of</strong> known<br />

genes within a family is discussed.<br />

Key words Phanerochaete chrysosporium ·<br />

Differential <strong>display</strong> · Cellulose-binding domain ·<br />

Differential gene expression<br />

Introduction<br />

The polysaccharide cellulose is the most abundant organic<br />

material on earth. It is thus our principle renewable resource<br />

and, as such, is <strong>of</strong> significant importance as a source <strong>of</strong> food,<br />

fuel and fibre. In Nature, it is intimately associated with the<br />

polymers lignin and hemicellulose to form lignocellulose.<br />

P. R. J. Birch<br />

Fungal and Bacterial Plant Pathology Department,<br />

Scottish Crop Research Institute,<br />

Invergowrie, Dundee, DD2 5DA, UK<br />

Fax: +44-1382-562426<br />

e-mail: pbirch@scri.sari.ac.uk.<br />

Communicated by H. N. Arst<br />

Many microorganisms can de-polymerise cellulose; the<br />

best studied <strong>of</strong> these is the deuteromycete fungus Trichoderma<br />

reesei (Béguin and Aubert 1994). However, very few<br />

can break down all three components <strong>of</strong> lignocellulose. Of<br />

these, only the basidiomycete fungi have been studied in<br />

detail and only Phanerochaete chrysosporium has been<br />

well characterised (Gold and Alic 1993; Broda et al. 1996).<br />

Two classes <strong>of</strong> hydrolytic enzymes are involved in the<br />

de-polymerisation <strong>of</strong> crystalline cellulose, endoglucanases<br />

(EGs) and cellobiohydrolases (CBHs). In both fungal and<br />

bacterial systems such enzymes generally have a structure<br />

comprising a catalytic domain, separated from a cellulosebinding<br />

domain (CBD) by a linker region (Gilkes et al.<br />

1991). Of these, the CBDs, although differing between<br />

fungi and bacteria, are highly conserved in all species that<br />

have been studied within each kingdom (Gilkes et al. 1991;<br />

Béguin and Aubert 1994; H<strong>of</strong>frén et al. 1995).<br />

Recently, two novel methods for isolating genes encoding<br />

fungal cell-wall hydrolases have been reported.<br />

Dalbøge and Heldt-Hansen (1994) isolated both cellulase<br />

and xylanase genes from Humicola insolens by expression<br />

<strong>of</strong> a cDNA library in yeast and subsequent screening for<br />

appropriate enzyme activities. An alternative strategy was<br />

employed by Sheppard et al. (1994) who designed degenerate<br />

primers for PCR, based on intra-family sequence similarities,<br />

exploiting the hydrophobic cluster analysis-derived<br />

cellulase classification <strong>of</strong> Henrissat and Bairoch<br />

(1993). Genomic DNA fragments were amplified and used<br />

as probes to screen a cDNA library; five cDNAs coding<br />

for distinct cellulase homologues were cloned and sequenced.<br />

A drawback <strong>of</strong> both methods is the time and labour involved<br />

in cDNA library construction, which requires microgram<br />

amounts <strong>of</strong> mRNA and is normally made after<br />

growth on a particular substrate. We have shown previously<br />

that cellulase genes from P. chrysosporium are <strong>differential</strong>ly<br />

<strong>expressed</strong>, both temporally and according to<br />

substrate (Tempelaars et al. 1994; Birch et al. 1995; Broda<br />

et al. 1995), and thus a number <strong>of</strong> cDNA libraries would<br />

be needed to screen all <strong>of</strong> the genes encoding this family<br />

<strong>of</strong> enzymes.


A number <strong>of</strong> PCR-based methods for rapidly comparing<br />

pr<strong>of</strong>iles <strong>of</strong> gene expression have been reported. One<br />

such method, <strong>differential</strong> <strong>display</strong> (DDRT-PCR), involves<br />

the random amplification <strong>of</strong> <strong>sequences</strong> from cDNA populations<br />

<strong>of</strong> interest using short oligonucleotide primers in<br />

combination with primers which anneal to the polyA tail<br />

<strong>of</strong> the cDNA; amplification products are then directly compared<br />

on polyacrylamide gels (Liang and Pardee 1992).<br />

Here, the DDRT-PCR approach has been modified to<br />

screen specifically for <strong>sequences</strong> containing regions encoding<br />

CBDs from P. chrysosporium, after growth on three<br />

different carbon (C) sources. In this case, the short primers<br />

used for DDRT-PCR are replaced by longer degenerate<br />

primers designed to anneal to a conserved region <strong>of</strong> the<br />

CBD-encoding sequence, allowing the annealing temperature<br />

<strong>of</strong> the PCR reaction to be elevated, and thus to be<br />

more specific. CBDs are present in the majority <strong>of</strong> fungal<br />

cellulases studied to-date and have also been reported in a<br />

xylanase from H. insolens (Dalbøge and Heldt-Hansen<br />

1994), a β mannanase (Stålbrand et al. 1995) and an acetyl<br />

xylan esterase (Margolles-Clark et al. 1996) from T. reesei.<br />

Materials and methods<br />

Organism and culture media. P. chrysosporium ME446 (ATCC<br />

34541) was maintained on 2% (w/v) slopes malt-extract agar. The<br />

culture medium was a modified Vogel’s medium as described previously<br />

(Tempelaars et al. 1994), containing 0.2% (w/v) <strong>of</strong> a carbon<br />

source from Avicel (microcrystalline cellulose), carboxymethyl cellulose<br />

(CMC) (amorphous cellulose) or oatspelt arabinoxylan.<br />

DNA manipulations. DNA was extracted from P. chrysosporium as<br />

described by Raeder and Broda (1985). Southern blotting was onto<br />

Hybond N membrane (Amersham) and hybridisation was performed<br />

using the low-stringency conditions described in Sambrook et al.<br />

(1989). All techniques referred to below were according to the<br />

manufacturers’ recommendations. Colony hybridisations were made<br />

on Hybond C extra membrane (Amersham). PCR-amplified DNA<br />

fragments were purified for cloning using the Promega Wizard PCR<br />

Preps kit. PCR-amplified DNA was cloned using the pGEM-T vector<br />

cloning kit (Promega) and transformed into Stratagene Ultracompetent<br />

Epicurian coli XL2-blue MRF′ cells. Plasmid preparations<br />

were made using the Qiagen Plasmid Miniprep kit. Sequencing <strong>of</strong><br />

cloned PCR products was performed using the ABI PRISM Dye Terminator<br />

cycle sequencing kit <strong>of</strong> Perkin Elmer. The 32 P-radiolabelled<br />

probe DNA was prepared using the Random Primed Labelling kit <strong>of</strong><br />

Pharmacia.<br />

RNA extraction and cDNA synthesis. P. chrysosporium was inoculated<br />

into liquid culture as previously described and the mycelium<br />

was harvested after 4-days stationary incubation at 37°C (Tempelaars<br />

et al. 1994). The mycelium was ground under liquid nitrogen<br />

and RNA extracted using the Qiagen RNeasy kit. Poly (A) + mRNA<br />

was purified from this with a Dynal’s Dynabeads mRNA extraction<br />

kit. cDNA was synthesised from mRNA with the Pharmacia First-<br />

Strand cDNA synthesis kit, using the NotI primer supplied with the<br />

kit.<br />

Design <strong>of</strong> PCR primers and RT-PCR conditions for targeted <strong>differential</strong><br />

<strong>display</strong>. Figure 4 shows an alignment <strong>of</strong> the amino-acid <strong>sequences</strong><br />

<strong>of</strong> 30 previously published fungal CBD regions. From amino-acid<br />

positions 2–8, 25 <strong>of</strong> these vary only at position 7, involving<br />

<strong>sequences</strong> GQCGGI/N/QG. Three degenerate oligonucleotide primers<br />

were designed to anneal to DNA <strong>sequences</strong> coding for these regions.<br />

Primer 1 (5′-GGNCAGTGCGGNGGNATPyGG-3′) anneals<br />

to <strong>sequences</strong> coding for GQCGGIG, primer 2 (5′-GGNCAGTGC<br />

GGNGGNCAGGG-3′) anneals to <strong>sequences</strong> coding for GQCGGQG,<br />

and primer 3 (5′-GGNCAGTGCGGNGGNAAPyGG-3′) anneals to<br />

<strong>sequences</strong> coding for GQCGGNG. On the basis <strong>of</strong> codon usage in<br />

known P. chrysosporium genes, the codon CAG was employed for<br />

amino-acid Q. Each <strong>of</strong> these primers was used independently in<br />

DDRT-PCR reactions with a primer which anneals to the poly-A tail<br />

(5′-ATTCGCGGCCGCAGGAT 15 ), which is derived from the Pharmacia<br />

NotI dT primer used for cDNA synthesis. Primer 4<br />

(5′-GCACTGCGAGTAGTA-3′) was used in combination with primer<br />

1 to PCR-amplify the region coding for the CBD from the cbhI.1<br />

gene <strong>of</strong> P. chrysosporium, cloned in 3E2D (Sims et al. 1994). The<br />

cbhII upstream primer, 5′-CCTCAGCCCTTACTACGC-3′, was as<br />

used for RT-PCR in Tempelaars et al. (1994) with an annealing temperature<br />

<strong>of</strong> 55°C. To prevent primers 1–3 acting as RAPD primers,<br />

generating PCR products in the absence <strong>of</strong> any other primer, an annealing<br />

temperature <strong>of</strong> 65°C was employed. The RT-PCR conditions<br />

were: one cycle <strong>of</strong> 94°C for 1 min, 65°C for 1 min, 72°C for 2 min;<br />

30 cycles <strong>of</strong> 94°C for 30 s, 65°C for 30 s, 72°C for 1.5 min, and a<br />

cycle <strong>of</strong> 72°C for 10 min.<br />

Results<br />

Isolation <strong>of</strong> cDNA <strong>sequences</strong> which hybridise<br />

to the CBD-encoding region <strong>of</strong> cbhI.1<br />

from P. chrysosporium ME446<br />

71<br />

P. chrysosporium was grown for 4 days at 37°C in medium<br />

containing either Avicel, CMC, or oatspelt arabinoxylan.<br />

The rationale for choosing these C sources is that Avicel<br />

is commonly regarded as an exocellulase substrate, CMC<br />

as an endocellulase substrate, while xylan is the major component<br />

<strong>of</strong> hemicellulose; the expression <strong>of</strong> different components<br />

<strong>of</strong> the lignocellulolytic system has been shown to<br />

occur after growth on each (Broda et al. 1995). cDNA was<br />

synthesised from poly (A) + mRNA prepared from mycelia<br />

grown on each medium and, in each case, 50 ng was<br />

used in PCR reactions containing either CBD primer 1, 2<br />

or 3, each in combination with an oligo-dT primer which<br />

anneals specifically to the poly-A tail <strong>of</strong> cDNA.<br />

Initially, however, to test whether, under all conditions,<br />

intact mRNA had been extracted and converted to cDNA,<br />

RT-PCR was performed using a primer which anneals to<br />

the cbhII gene <strong>of</strong> P. chrysosporium in combination with<br />

the oligo-dT primer. This cellulase gene is <strong>expressed</strong> after<br />

growth on Avicel, CMC, and xylan (Tempelaars et al. 1994)<br />

and thus cDNA derived from it should be detected in each<br />

sample. This proved to be the case, and a PCR product <strong>of</strong><br />

a size expected from cbhII cDNA using these primers, approximately<br />

1.4 kb, was generated from each cDNA sample,<br />

whereas no such product was generated from genomic<br />

DNA (Fig. 1).<br />

To test whether the products amplified, using CBD<br />

primers 1, 2 or 3 with the oligo-dT primer, contained <strong>sequences</strong><br />

which share homology with a CBD-encoding region,<br />

each population <strong>of</strong> PCR products was separated by<br />

gel electrophoresis. These were then Southern blotted and<br />

hybridised, using low-stringency conditions, to a probe derived<br />

from the P. chrysosporium cbhI.1 gene. To prepare


72<br />

Fig. 1 PCR amplification with a primer which anneals to the cbhII<br />

gene <strong>of</strong> P. chrysosporium, in combination with the oligo-dT primer,<br />

using cDNA prepared after growth on Avicel (2), CMC (3) or xylan<br />

(4), or genomic DNA (1) as the template. The size <strong>of</strong> the cbhII cDNAamplification<br />

product in base pairs is given to the right <strong>of</strong> the<br />

panel<br />

Fig. 2A,B PCR amplification products (the left half <strong>of</strong> each panel),<br />

generated using either CBD-specific primer 1 (panel A) or primer<br />

2 (panel B) each in combination with the oligo-dT primer. Templates<br />

were either genomic DNA from P. chrysosporium (lane 1), or<br />

cDNA prepared after growth on either Avicel (2), CMC (3) or xylan<br />

(4), or no template (negative control; 5). The right half <strong>of</strong> each panel<br />

shows Southern hybridisation, under low-stringency conditions,<br />

<strong>of</strong> DNA transferred from each <strong>of</strong> these agarose gels to a probe derived<br />

from the CBD-encoding region <strong>of</strong> cbhI.1 from P. chrysosporium.<br />

Size markers are given in base pairs to the right <strong>of</strong> each panel<br />

this probe, primers 1 and 4 were used to amplify from position<br />

1452 to 1548, containing the CBD-encoding region<br />

<strong>of</strong> the cbhI.1 cDNA sequence cloned into plasmid 3E2D<br />

(Sims et al. 1994). Amplification products obtained from<br />

cDNA prepared after growth on either Avicel or CMC, using<br />

either primer 1 or primer 2, strongly hybridised to <strong>sequences</strong><br />

<strong>of</strong> between 200 and 400 bp (Fig. 2). However,<br />

only weak hybridisation was observed to xylan-derived<br />

PCR products. In all cases, amplification products were<br />

obtained which failed to hybridise to the probe (Fig. 2).<br />

Only very weak hybridisation was observed to amplification<br />

products obtained using primer 3, and these products<br />

were thus excluded from further analyses (data not shown).<br />

To isolate <strong>sequences</strong> which hybridise to the CBD probe,<br />

each population <strong>of</strong> amplification products, obtained after<br />

amplification with either primer 1 or 2 from cDNA derived<br />

from P. chrysosporium grown on Avicel, CMC or xylan,<br />

was shotgun-cloned into the vector pGEM-T. One-hundred<br />

white colonies from each cloning event were screened by<br />

low-stringency hybridisation to the CBD probe. Several<br />

strongly hybridising clones were obtained from cDNAs<br />

amplified after growth on either Avicel or CMC. However,<br />

only weakly hybridising clones were obtained from<br />

cDNAs amplified after growth on xylan. Plasmid DNA was<br />

prepared for sequence analysis from both strongly and<br />

weakly hybridising colonies.<br />

Sequence analysis <strong>of</strong> cloned cDNAs which hybridise<br />

to the CBD probe<br />

Sequences derived from weakly hybridising clones contained<br />

no open reading frames (ORFs) which shared identity<br />

with known fungal CBDs (data not shown). However,<br />

such <strong>sequences</strong> were obtained from all strongly hybridising<br />

colonies. Using primer 1 with the oligo-dT primer,<br />

three different CBD-encoding <strong>sequences</strong> were identified<br />

(Fig. 3). Two <strong>of</strong> these contain <strong>sequences</strong> matching the previously<br />

published cbhI.1 and cbhI.2 genes (Fig. 3 A and B<br />

respectively). However, the third sequence obtained is<br />

novel (Fig. 3 C). The lengths <strong>of</strong> the <strong>sequences</strong> varied, from<br />

220 bp in the case <strong>of</strong> the region amplified from cbhI.1, to<br />

approximately 370 bp in the case <strong>of</strong> ac1 (Fig. 3 C). This<br />

was expected, as the CBD probe had hybridised to fragments<br />

<strong>of</strong> 200–400 bp (see above; Fig. 2 A). Variation in<br />

sequence length was most pronounced in amplification<br />

products derived from cbhI.1; four sites <strong>of</strong> polyadenylation<br />

were observed (Fig. 3 A), resulting in fragments from<br />

220- to 260-bp long.<br />

Two different classes <strong>of</strong> <strong>sequences</strong> containing CBD-encoding<br />

ORFs were obtained using primer 2 with the oligodT<br />

primer. Each <strong>of</strong> these represents a novel sequence<br />

(Fig. 3 D and E). Clones containing sequence ac2 were approximately<br />

210-bp long, whereas those containing cmc1<br />

were approximately 240-bp long. Again, these sizes are in<br />

agreement with the hybridisation reported in Fig. 2 B.<br />

Table 1 shows the number <strong>of</strong> each class <strong>of</strong> sequence obtained<br />

as a percentage <strong>of</strong> the colonies screened by hybridisation.<br />

Sequences matching cbhI.1 and cbhI.2, and novel<br />

<strong>sequences</strong> ac1 and ac2, were all amplified from cDNAs<br />

prepared after growth on both Avicel and CMC. In contrast,<br />

sequence cmc1 was only detected in cDNAs prepared<br />

after growth on CMC. With the exception <strong>of</strong> cmc1, the sequence<br />

differences between clones suggested that both alleles<br />

<strong>of</strong> each sequence were identified (Fig. 3). To allow<br />

for differences arising from PCR, such allelic differences<br />

were based on consistent nucleotide differences being observed<br />

in two or more clones <strong>of</strong> each class <strong>of</strong> transcript for<br />

Table 1 Number <strong>of</strong> clones (%) isolated <strong>of</strong> each CBD-encoding sequence<br />

Sequence Number <strong>of</strong> clones sequenced (%)<br />

Avicel CMC Xylan<br />

cbhI.1 26 21 0<br />

cbhI.2 16 19 0<br />

ac1 2 3 0<br />

ac2 10 7 0<br />

cmc1 0 12 0


73<br />

Fig. 3 A–E DNA <strong>sequences</strong><br />

<strong>of</strong> each <strong>of</strong> the five classes <strong>of</strong><br />

amplified cDNA fragments<br />

containing CBD-encoding regions<br />

(A–E), where A = cbhI.1,<br />

B = cbhI.2, C = ac1, D = ac2<br />

and E = cmc1. Differences<br />

between alleles are indicated by<br />

underlining and the alternative<br />

base is given beneath. Underlining<br />

<strong>of</strong> a base with a star (*)<br />

beneath indicates alternative<br />

positions at which the poly-A<br />

tail is added. The predicted<br />

amino-acid sequence is shown<br />

above the corresponding coding<br />

sequence (capital letters). The<br />

sequence in bold represents a<br />

sequence present in one allele<br />

<strong>of</strong> the cbhI.2 gene (B) which is<br />

absent in the other. Alternative<br />

stop codons in <strong>differential</strong>ly<br />

spliced transcripts <strong>of</strong> each allelic<br />

variant <strong>of</strong> cbhI.2 (B) are indicated<br />

in both bold and italics


from P. chrysosporium, or from unspliced transcripts <strong>of</strong><br />

cbhI.1 and cbhI.2. Firstly, more abundant classes <strong>of</strong> transcript<br />

may out-compete rarer classes in the PCR. Such competition<br />

may explain the failure to detect unspliced transcripts<br />

<strong>of</strong> cbhI.1 and cbhI.2, as the fully spliced transcripts<br />

are more <strong>abundantly</strong> synthesised after growth on these substrates<br />

and may thus have out-competed them (Sims et al.<br />

1994; Birch et al. 1995). Such a bias <strong>of</strong> DDRT-PCR towards<br />

high copy number cDNAs has been demonstrated<br />

previously (Bertioli et al. 1995). Secondly, there may be<br />

insufficient identity between the degenerate primers and<br />

the CBD-encoding regions within the cellulase genes. This<br />

is the case for the cbh1-2 gene, which contains a region<br />

coding for SQCGGLG; this differs from equivalent <strong>sequences</strong><br />

chosen for the design <strong>of</strong> primers 1, 2 and 3 and,<br />

indeed, is different to analogous regions in any other<br />

known fungal CBD (Fig. 4). Thirdly, the CBD-encoding<br />

regions <strong>of</strong> all <strong>sequences</strong> isolated in this study are located<br />

at the 3′ ends <strong>of</strong> the ORF. In the case <strong>of</strong> cbhII, this region<br />

is present at the 5′ end <strong>of</strong> the ORF. Use <strong>of</strong> a specific primer<br />

for cbhII confirmed that cDNAs derived from this gene<br />

were present in samples prepared after growth on Avicel,<br />

CMC, and xylan. However, when using CBD-specific<br />

primer 1, cbhII cDNA templates were out-competed in all<br />

PCR reactions by templates yielding smaller amplification<br />

products, including those from cbhI.1 and cbhI.2 in the<br />

cases <strong>of</strong> Avicel and CMC. Although such competition may<br />

be due simply to different levels <strong>of</strong> gene expression, the<br />

abundance <strong>of</strong> cbhII templates relative to those from cbhI.1<br />

and cbhI.2 may also be effected by the efficiency <strong>of</strong> cDNA<br />

synthesis, which is primed from the 3′ end <strong>of</strong> mRNA. In<br />

addition, the larger PCR product predicted from cbhII<br />

cDNA may be amplified less efficiently than the small PCR<br />

products isolated in this study. Both <strong>of</strong> these factors should<br />

be considered when designing degenerate primers to target<br />

a family <strong>of</strong> genes. It is thus recommended that conserved<br />

<strong>sequences</strong> should be sought which are present at<br />

only one location in all known genes in the family and that<br />

the location should be as near to the 3′ end as possible.<br />

Interestingly, partial protein sequence from one <strong>of</strong> the<br />

EGs produced by P. chrysosporium, EG1, has revealed an<br />

N-terminal CBD containing the sequence GQCGGIG<br />

(Uzcategui et al. 1991 b), identical to those encoded by<br />

equivalent nucleotides in cbhI.1, cbhI.2 and cbhII, from<br />

which primer 1 was designed. As was the case for cbhII,<br />

however, cDNAs coding for this gene were also not detected.<br />

Further work will be required to identify the genes from<br />

which the three novel cDNAs containing CBD-encoding<br />

regions are derived. However, they may originate from<br />

transcripts <strong>of</strong> the partially characterised cbh1-5 and<br />

cbh1-6 (Covert et al. 1992 b) genes, or from the gene that<br />

is predicted to code for both EG38 and EG36 (Uzcategui<br />

et al. 1991 a). Indeed, although Northern analysis would<br />

be required to confirm patterns <strong>of</strong> regulation for these<br />

genes, one sequence isolated in this study, cmc1, was amplified<br />

only from cDNA prepared after growth on CMC,<br />

which is commonly regarded as an EG substrate. In addition,<br />

a cellulose-binding β-glucosidase has been purified<br />

from cellulose-degrading cultures <strong>of</strong> P. chrysosporium and<br />

this too may contain a CBD (Lymar et al. 1995). However,<br />

not all cellulolytic enzymes that bind to microcrystalline<br />

cellulose contain a conventional fungal CBD; this is the<br />

case for cellobiose dehydrogenase from P. chrysosporium<br />

(Li et al. 1996).<br />

In conclusion, the targeted DDRT-PCR approach described<br />

here has been successfully applied to the isolation<br />

<strong>of</strong> novel, abundant cDNA <strong>sequences</strong> containing regions<br />

coding for CBDs and has also confirmed previous observations<br />

on the regulation <strong>of</strong> known genes containing such<br />

regions. Although not a comprehensive screen, the speed<br />

<strong>of</strong> analysis <strong>of</strong> this method makes it attractive for an initial<br />

study <strong>of</strong> more highly <strong>expressed</strong> genes from fungi which<br />

contain such regions. The requirement for only small quantities<br />

<strong>of</strong> mRNA means that a broad number <strong>of</strong> growth conditions<br />

can easily be studied in parallel. In addition, this<br />

approach could readily be adapted to the investigation <strong>of</strong><br />

other gene families, provided sufficient homology exists<br />

between related <strong>sequences</strong> for a general probe to be developed<br />

for the hybridisation-screening <strong>of</strong> cloned cDNAs.<br />

Failing this, additional conserved regions should be sought<br />

within the amplified region which can be used to design<br />

degenerate primers for screening by nested PCR.<br />

Acknowledgements This work was supported by grant RO361<br />

from the Scottish Office Agriculture, Environment and Fisheries Department.<br />

References<br />

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