Package 'WGCNA' - Laboratory Web Sites - UCLA
Package 'WGCNA' - Laboratory Web Sites - UCLA
Package 'WGCNA' - Laboratory Web Sites - UCLA
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38 cutreeStaticColor<br />
Value<br />
A data frame whose rows correspond to consensus module eigengenes given in the input multiME,<br />
and columns correspond to all possible set comparisons. The two sets compared in each column are<br />
indicated in the column name.<br />
Author(s)<br />
Peter Langfelder<br />
References<br />
Langfelder P, Horvath S (2007) Eigengene networks for studying the relationships between coexpression<br />
modules. BMC Systems Biology 2007, 1:54<br />
See Also<br />
multiSetMEs and modulecheckSets in package moduleColor for more on eigengenes and the<br />
multi-set format<br />
cutreeStaticColor<br />
Constant height tree cut using color labels<br />
Description<br />
Cluster detection by a constant height cut of a hierarchical clustering dendrogram.<br />
Usage<br />
cutreeStaticColor(dendro, cutHeight = 0.9, minSize = 50)<br />
Arguments<br />
dendro<br />
cutHeight<br />
minSize<br />
a hierarchical clustering dendrogram such as returned by hclust.<br />
height at which branches are to be cut.<br />
minimum number of object on a branch to be considered a cluster.<br />
Details<br />
Value<br />
This function performs a straightforward constant-height cut as implemented by cutree, then calculates<br />
the number of objects on each branch and only keeps branches that have at least minSize<br />
objects on them.<br />
A character vector giving color labels of objects, with "grey" meaning unassigned. The largest<br />
cluster is conventionally labeled "turquoise", next "blue" etc. Run standardColors() to see<br />
the sequence of standard color labels.<br />
Author(s)<br />
Peter Langfelder
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