The ade4 Package - NexTag Supports Open Source Initiatives

More documents

Recommendations

Info

106 gearymoran References See Also put references to the literature/web site here char2genet if you have the a priori definition of the groups of individuals (populations). It may be used on the created object dudi.fca Examples data(casitas) casitas[1:5, ] casitas
genet 107 Value Returns an object of class krandtest (randomization tests). Author(s) Sébastien Ollier 〈ollier@biomserv.univ-lyon1.fr〉 Daniel Chessel References Cliff, A. D. and Ord, J. K. (1973) Spatial autocorrelation, Pion, London. Thioulouse, J., Chessel, D. and Champely, S. (1995) Multivariate analysis of spatial patterns: a unified approach to local and global structures. Environmental and Ecological Statistics, 2, 1–14. See Also moran.test and geary.test for classical versions of Moran’s test and Geary’s one Examples # a spatial example data(mafragh) tab0
Page 1 and 2:
The ade4 Package February 16, 2008
Page 3 and 4:
R topics documented: 3 dudi.acm . .
Page 5 and 6:
R topics documented: 5 plot.phylog
Page 7 and 8:
EH 7 EH Amount of Evolutionary Hist
Page 9 and 10:
RV.rtest 9 RV.rtest Monte-Carlo Tes
Page 11 and 12:
acacia 11 Format abouheif.eg is a l
Page 13 and 14:
add.scatter 13 Usage add.scatter(fu
Page 15 and 16:
ade4toR 15 Arguments fictab ficcoln
Page 17 and 18:
amova 17 amova Analysis of molecula
Page 19 and 20:
ardeche 19 ardeche Fauna Table with
Page 21 and 22:
area.plot 21 Value possub cpoint la
Page 23 and 24:
arrival 23 # 4 fr.poly
Page 25 and 26:
atlas 25 par(mfrow = c(1,1)) all(di
Page 27 and 28:
avijons 27 Examples ## Not run: dat
Page 29 and 30:
avimedi 29 par(mfcol=c(3,2)) s.valu
Page 31 and 32:
acteria 31 Details aviurba$mil cont
Page 33 and 34:
aran95 33 eparlog : "Savings and lo
Page 35 and 36:
etween 35 par(mfrow = c(1,1)) betwe
Page 37 and 38:
icenter.wt 37 Format Source A list
Page 39 and 40:
setal97 39 Format bsetal97 is a lis
Page 41 and 42:
utterfly 41 Examples data(buech) pa
Page 43 and 44:
capitales 43 is.euclid(d1) # TRUE p
Page 45 and 46:
carniherbi49 45 Format Source carni
Page 47 and 48:
cca 47 Usage data(casitas) Format T
Page 49 and 50:
chatcat 49 s.match(iv1$ls, iv1$li,
Page 51 and 52:
chazeb 51 chazeb Charolais-Zebus De
Page 53 and 54:
cnc2003 53 Usage data(clementines)
Page 55 and 56: coinertia 55 coinertia Coinertia An
Page 57 and 58: coleo 57 coleo Table of Fuzzy Biolo
Page 59 and 60: corvus 59 Examples data(friday87) f
Page 61 and 62: disc 61 disc Rao’s dissimilarity
Page 63 and 64: discrimin.coa 63 See Also lda in pa
Page 65 and 66: dist.dudi 65 5 = Czekanowski (1913)
Page 67 and 68: dist.genet 67 Let P the table of ge
Page 69 and 70: dist.prop 69 Value returns a distan
Page 71 and 72: dist.quant 71 Arguments df method d
Page 73 and 74: divcmax 73 divcmax Maximal value of
Page 75 and 76: dotchart.phylog 75 Usage dotchart.p
Page 77 and 78: doubs 77 doubs Pair of Ecological T
Page 79 and 80: dpcoa 79 Value option csize the fun
Page 81 and 82: dudi.acm 81 Value as.dudi and all t
Page 83 and 84: dudi.coa 83 Examples data(ours) sum
Page 85 and 86: dudi.fca 85 Arguments df eff scannf
Page 87 and 88: dudi.hillsmith 87 data(bsetal97) w
Page 89 and 90: dudi.mix 89 Details If df contains
Page 91 and 92: dudi.pca 91 dudi.pca Principal Comp
Page 93 and 94: dudi.pco 93 Usage dudi.pco(d, row.w
Page 95 and 96: ecg 95 ecg Electrocardiogram data D
Page 97 and 98: elec88 97 References See a data des
Page 99 and 100: escopage 99 escopage K-tables of wi
Page 101 and 102: foucart 101 References Cheverud, J.
Page 103 and 104: friday87 103 friday87 Faunistic K-t
Page 105: fuzzygenet 105 fuzzygenet Reading a
Page 109 and 110: genet 109 Value char2genet returns
Page 111 and 112: granulo 111 Examples if(require(pix
Page 113 and 114: hdpg 113 Examples w
Page 115 and 116: humDNAm 115 Usage data(housetasks)
Page 117 and 118: inertia.dudi 117 inertia.dudi Stati
Page 119 and 120: is.euclid 119 contour is a data fra
Page 121 and 122: julliot 121 Format julliot is a lis
Page 123 and 124: kcponds 123 Examples data(jv73) s.l
Page 125 and 126: kdist 125 Details The attributs of
Page 127 and 128: kdisteuclid 127 Value returns a lis
Page 129 and 130: kplot 129 kplot Generic Function fo
Page 131 and 132: kplot.mfa 131 csub possub a charact
Page 133 and 134: kplot.sepan 133 which.graph an opti
Page 135 and 136: kplot.statis 135 w
Page 137 and 138: ktab 137 Value plot.krandtest draws
Page 139 and 140: ktab.data.frame 139 Examples data(f
Page 141 and 142: ktab.list.dudi 141 Examples data(jv
Page 143 and 144: ktab.within 143 Examples data(meau)
Page 145 and 146: lingoes 145 Examples data(lascaux)
Page 147 and 148: macaca 147 References Bauwens, D.,
Page 149 and 150: mantel.randtest 149 Source Belair,
Page 151 and 152: maples 151 Arguments m1 m2 nrepet a
Page 153 and 154: mcoa 153 Source Codes for rows and
Page 155 and 156: meau 155 Examples data(friday87) w1
Page 157 and 158:
mfa 157 mfa Multiple Factorial Anal
Page 159 and 160:
microsatt 159 Format microsatt is a
Page 161 and 162:
mld 161 Examples data(mjrochet) mjr
Page 163 and 164:
monde84 163 Format Source mollusc i
Page 165 and 166:
mstree 165 mstree Minimal Spanning
Page 167 and 168:
multispati 167 Value Returns an obj
Page 169 and 170:
multispati.randtest 169 w1.msm
Page 171 and 172:
neig 171 Author(s) Daniel Chessel S
Page 173 and 174:
neig 173 #hist(dist, nclass = 50) m
Page 175 and 176:
newick2phylog 175 References Bauwen
Page 177 and 178:
niche 177 w[19]
Page 179 and 180:
njplot 179 Author(s) Daniel Chessel
Page 181 and 182:
optimEH 181 Source Example 357 in:
Page 183 and 184:
originality 183 Details Variables o
Page 185 and 186:
orisaved 185 orisaved Maximal or mi
Page 187 and 188:
orthobasis 187 Value All the functi
Page 189 and 190:
orthogram 189 orthogram Orthonormal
Page 191 and 192:
ours 191 Examples # a phylogenetic
Page 193 and 194:
palm 193 palm Phylogenetic and quan
Page 195 and 196:
pcaiv 195 pcaiv Principal component
Page 197 and 198:
pcaivortho 197 Arguments dudi df sc
Page 199 and 200:
perthi02 199 Author(s) Daniel Chess
Page 201 and 202:
phylog 201 paths droot call Wmat Wd
Page 203 and 204:
plot.phylog 203 f.phylog circle cle
Page 205 and 206:
presid2002 205 ## Not run: # plot a
Page 207 and 208:
procuste 207 Format procella is a l
Page 209 and 210:
procuste.randtest 209 References Di
Page 211 and 212:
pta 211 Arguments df1 df2 nrepet a
Page 213 and 214:
quasieuclid 213 Author(s) Pierre Ba
Page 215 and 216:
andtest-internal 215 References Nee
Page 217 and 218:
andtest.amova 217 Examples par(mfro
Page 219 and 220:
andtest.coinertia 219 randtest.coin
Page 221 and 222:
ankrock 221 # Df Pillai approx F nu
Page 223 and 224:
hone 223 rhone Physico-Chemistry Da
Page 225 and 226:
lq 225 nf RV eig lw cw tab li l1 co
Page 227 and 228:
test 227 Examples ## Not run: data(
Page 229 and 230:
test.discrimin 229 References Romes
Page 231 and 232:
s.chull 231 addaxes cgrid sub csub
Page 233 and 234:
s.class 233 Examples xy 0) coul 0
Page 235 and 236:
s.corcircle 235 possub = "bottomrig
Page 237 and 238:
s.distri 237 Value clabel cpoint pc
Page 239 and 240:
s.image 239 Examples data(rpjdl) co
Page 241 and 242:
s.kde2d 241 s.image(t3012$xy, scale
Page 243 and 244:
s.label 243 Arguments Value dfxy xa
Page 245 and 246:
s.logo 245 Value xax yax neig cneig
Page 247 and 248:
s.multinom 247 Value cgrid a charac
Page 249 and 250:
s.traject 249 Value Returns in a hi
Page 251 and 252:
s.value 251 Examples rw
Page 253 and 254:
santacatalina 253 par(mfrow = c(3,4
Page 255 and 256:
scalewt 255 scalewt Centring and Sc
Page 257 and 258:
scatter 257 Author(s) See Also Dani
Page 259 and 260:
scatter.dudi 259 Arguments x xax ya
Page 261 and 262:
scatter.fca 261 scatter.fca Plot of
Page 263 and 264:
sco.distri 263 banque.acm
Page 265 and 266:
score 265 Arguments score df fac cl
Page 267 and 268:
score.coa 267 Arguments x xax which
Page 269 and 270:
score.mix 269 par(mfrow = c(1,1)) s
Page 271 and 272:
seconde 271 seconde Students and Su
Page 273 and 274:
skulls 273 skulls Morphometric Evol
Page 275 and 276:
steppe 275 C.T4 TL TC T4 a data fra
Page 277 and 278:
suprow 277 Details If supcol.defaul
Page 279 and 280:
symbols.phylog 279 symbols.phylog R
Page 281 and 282:
table.cont 281 Format Source t3012
Page 283 and 284:
table.paint 283 Usage table.dist(d,
Page 285 and 286:
table.value 285 labels.col clabel.c
Page 287 and 288:
tarentaise 287 Format tarentaise is
Page 289 and 290:
testdim 289 testdim Function to per
Page 291 and 292:
tithonia 291 s.label(tintoodiel$xy,
Page 293 and 294:
toxicity 293 points(ref,xyz[,2], pc
Page 295 and 296:
triangle.plot 295 show.position a l
Page 297 and 298:
trichometeo 297 Examples data (euro
Page 299 and 300:
uniquewt.df 299 Source Data were ob
Page 301 and 302:
vegtf 301 Value Returns a list cont
Page 303 and 304:
westafrica 303 Details The columns
Page 305 and 306:
within 305 afri.ms
Page 307 and 308:
withinpca 307 withinpca Normed with
Page 309 and 310:
worksurv 309 References Cazes, P.,
Page 311 and 312:
zealand 311 Examples data(yanomama)
Page 313 and 314:
Index ∗Topic array cailliez, 36 d
Page 315 and 316:
INDEX 315 krandtest, 130 randtest,
Page 317 and 318:
INDEX 317 bf88, 30 bicenter.wt, 31
Page 319 and 320:
INDEX 319 plot.procuste (procuste),
Page 321:
INDEX 321 wavelet.filter, 181 westa
show all

The ade4 Package - NexTag Supports Open Source Initiatives

You also want an ePaper? Increase the reach of your titles

Delete template?

Save as template?