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Contents 1 Phylogenetics Introduction 2 Tree Construction 3 Programs & Examples
Introduction Phylogenetics: The study of the evolutionary history of living organisms. Two major assumptions: 1. Molecular sequences used in phylogenetics construction are homologous. 2. Each position in a sequence evolved independently.
Page 1: Molecular Phylogenetics Li Jing Pek
Page 6 and 7: Study of phylogeny A phylogeny is a
Page 8 and 9: Introduction Terminal nodes (leaves
Page 10 and 11: Sister group & Outgroup Sister grou
Page 12 and 13: Polytomy & Dichotomy un-resolved re
Page 14 and 15: Contents 1 Phylogenetics Introducti
Page 16 and 17: Choosing Molecular Markers • Nucl
Page 18 and 19: Choosing Molecular Markers • Geno
Page 20 and 21: Choosing Models of Evolution Nucleo
Page 22 and 23: Tree Building Assumptions: Distance
Page 24 and 25: UPGMA Advantages: 1、Simple and fa
Page 26 and 27: Neighbor Joining (NJ) Advantages: 1
Page 28 and 29: Maximum Parsimony Parsimony is the
Page 30 and 31: Maximum Likelihood • Maximum like
Page 32 and 33: Rooting the Tree A 10 d (A,D) = 10
Page 34 and 35: Tree evaluation • A statistical t
Page 36: Contents 1 Phylogenetics Introducti
Page 39 and 40: Phylip Phylip 有多种不同
Page 41 and 42: Phylip 软件包的应用 1、
Page 43 and 44: 1、双击执行 protdist.exe,
Page 45 and 46: Bootstrap 分析两个用于
Page 48 and 49: Modeltest 3.7 Number of substitutio
Page 50: Acknowledge • Prof. Luo • Prof.

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