PASA Pipeline - Rice Genome Annotation Project
PASA Pipeline - Rice Genome Annotation Project
PASA Pipeline - Rice Genome Annotation Project
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Transcript Sequences<br />
<strong>PASA</strong> <strong>Pipeline</strong><br />
Seqclean<br />
Align to <strong>Genome</strong><br />
Cluster overlapping alignments<br />
<strong>PASA</strong> alignment assembly<br />
subCluster <strong>PASA</strong> assemblies<br />
Compare to annotation<br />
Update annotation<br />
<strong>Annotation</strong> Comparison<br />
FL-cDNAs and ESTs<br />
treated separately with<br />
different rules for<br />
incorporation<br />
<strong>Annotation</strong> Updates<br />
-exon modifications<br />
-alt splice isoform additions<br />
-gene merges<br />
-gene splits<br />
-new genes
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