PASA Pipeline - Rice Genome Annotation Project
PASA Pipeline - Rice Genome Annotation Project
PASA Pipeline - Rice Genome Annotation Project
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<strong>PASA</strong> Algorithm<br />
Find Maximal Assemblies for Missing<br />
Alignments (Alt Spliced Isoforms)<br />
Create reciprocal {right path} graph<br />
{chain compatible alignments from right to left}<br />
R a = maximal chain of alignments originating<br />
from the Right of alignment a and ending at a.<br />
For each missing alignment a, find the maximal assembly containing a<br />
(restated as sum of left and right paths)
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