78 <strong>np</strong>plregbwsubsetna.actionxdatydatzdatbwsan optional vector specifying a subset of observations to be used in the fittingprocess.a function which indicates what should happen when the data contain NAs. <strong>The</strong>default is set by the na.action setting of options, and is na.fail if that isunset. <strong>The</strong> (recommended) default is na.omit.a p-variate data frame of explanatory data (training data), corresponding to Xin the model equation, whose linear relationship with the dependent data Y isposited.a one (1) dimensional numeric or integer vector of dependent data, each elementi corresponding to each observation (row) i of xdat.a q-variate data frame of explanatory data (training data), corresponding to Z inthe model equation, whose relationship to the dependent variable is unspecified(no<strong>np</strong>arametric)a bandwidth specification. This can be set as a plbandwidth object returnedfrom an invocation of <strong>np</strong>plregbw, or as a matrix of bandwidths, each row isa set of bandwidths for Z, with a column for each variable Z i . In the first roware the bandwidths for the regression of Y on Z, the following rows containthe bandwidths for the regressions of the columns of X on Z. If specified as amatrix additional arguments will need to be supplied as necessary to specify thebandwidth type, kernel types, and so on.If left unspecified, <strong>np</strong>plregbw will search for optimal bandwidths using <strong>np</strong>regbwin the course of calculations. If specified, <strong>np</strong>plregbw will use the given bandwidthsas the starting point for the numerical search for optimal bandwidths,unless you specify bandwidth.compute = FALSE.... additional arguments supplied to specify the regression type, bandwidth type,kernel types, selection methods, and so on. To do this, you may specify any ofregtype, bwmethod, bwscaling, bwtype, ckertype, ckerorder,ukertype, okertype, as described in <strong>np</strong>regbw.bandwidth.computea logical value which specifies whether to do a numerical search for bandwidthsor not. If set to FALSE, a plbandwidth object will be returned with bandwidthsset to those specified in bws. Defaults to TRUE.nmultireminitmaxftoltolsmallinteger number of times to restart the process of finding extrema of the crossvalidationfunction from different (random) initial points. Defaults to min(5,ncol(xdat)).a logical value which when set as TRUE the search routine restarts from locatedminima for a minor gain in accuracy. Defaults to TRUEinteger number of iterations before failure in the numerical optimization routine.Defaults to 10000tolerance on the value of the cross-validation function evaluated at located minima.Defaults to 1.19e-07 (FLT_EPSILON)tolerance on the position of located minima of the cross-validation function.Defaults to 1.49e-08 (sqrt(DBL_EPSILON))a small number, at about the precision of the data type used. Defaults to 2.22e-16 (DBL_EPSILON)
<strong>np</strong>plregbw 79Details<strong>np</strong>plregbw implements a variety of methods for no<strong>np</strong>arametric regression on multivariate (qvariate)explanatory data defined over a set of possibly continuous and/or discrete (unordered, ordered)data. <strong>The</strong> approach is based on Li and Racine (2003) who employ ‘generalized productkernels’ that admit a mix of continuous and discrete datatypes.Three classes of kernel estimators for the continuous datatypes are available: fixed, adaptive nearestneighbor,and generalized nearest-neighbor. Adaptive nearest-neighbor bandwidths change witheach sample realization in the set, x i , when estimating the density at the point x. Generalizednearest-neighbor bandwidths change with the point at which the density is estimated, x. Fixedbandwidths are constant over the support of x.<strong>np</strong>plregbw may be invoked either with a formula-like symbolic description of variables on whichbandwidth selection is to be performed or through a simpler interface whereby data is passed directlyto the function via the xdat, ydat, and zdat parameters. Use of these two interfaces ismutually exclusive.Data contained in the data frame zdat may be a mix of continuous (default), unordered discrete(to be specified in the data frame zdat using factor), and ordered discrete (to be specified in thedata frame zdat using ordered). Data can be entered in an arbitrary order and data types will bedetected automatically by the routine (see <strong>np</strong> for details).Data for which bandwidths are to be estimated may be specified symbolically. A typical descriptionhas the form dependent data ~ parametric explanatory data | no<strong>np</strong>arametricexplanatory data, where dependent data is a univariate response, and parametricexplanatory data and no<strong>np</strong>arametric explanatory data are both series of variablesspecified by name, separated by the separation character ’+’. For example, y1 ~ x1 + x2| z1 specifies that the bandwidth object for the partially linear model with response y1, linearparametric regressors x1 and x2, and no<strong>np</strong>arametric regressor z1 is to be estimated. See below forfurther examples.A variety of kernels may be specified by the user. Kernels implemented for continuous datatypesinclude the second, fourth, sixth, and eighth order Gaussian and Epanechnikov kernels, and theuniform kernel. Unordered discrete datatypes use a variation on Aitchison and Aitken’s (1976)kernel, while ordered datatypes use a variation of the Wang and van Ryzin (1981) kernel.Valueif bwtype is set to fixed, an object containing bandwidths (or scale factors if bwscaling =TRUE) is returned. If it is set to generalized_nn or adaptive_nn, then instead the kthnearest neighbors are returned for the continuous variables while the discrete kernel bandwidths arereturned for the discrete variables. Bandwidths are stored in a list under the component name bw.Each element is an rbandwidth object. <strong>The</strong> first element of the list corresponds to the regressionof Y on Z. Each subsequent element is the bandwidth object corresponding to the regression of theith column of X on Z. See examples for more information.Usage IssuesIf you are using data of mixed types, then it is advisable to use the data.frame function toconstruct your i<strong>np</strong>ut data and not cbind, since cbind will typically not work as intended onmixed data types and will coerce the data to the same type.
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The np PackageFebruary 16, 2008Vers
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Italy 3Examplesdata("cps71")attach(
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wage1 5Examplesdata("oecdpanel")att
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gradients 7## S3 method for class '
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np 9A variety of bandwidth methods
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npcmstest 11npcmstestKernel Consist
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npcmstest 13ReferencesAitchison, J.
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npcdens 15npcdensKernel Conditional
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npcdens 17Valuenpcdens returns a co
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npcdens 19# Gaussian kernel (defaul
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npcdens 21# (1993) (see their descr
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npcdensbw 23fit
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npcdensbw 25na.actionxdatydatbwspro
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- Page 29 and 30: npconmode 29# depending on the spee
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- Page 33 and 34: npconmode 33lwt,family=binomial(lin
- Page 35 and 36: npudens 35npudensKernel Density and
- Page 37 and 38: npudens 37Author(s)Tristen Hayfield
- Page 39 and 40: npudens 39# EXAMPLE 1 (INTERFACE=DA
- Page 41 and 42: npudensbw 41library("datasets")data
- Page 43 and 44: npudensbw 43bwsa bandwidth specific
- Page 45 and 46: npudensbw 45fvalobjective function
- Page 47 and 48: npudensbw 47# previous examples.bw
- Page 49 and 50: npudensbw 49# previous examples.bw
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- Page 55 and 56: npksum 55# the bandwidth object its
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- Page 59 and 60: npplot 59plot.behavior = c("plot","
- Page 61 and 62: npplot 61xtrim = 0.0,neval = 50,com
- Page 63 and 64: npplot 63xdatydatzdatxqyqzqxtrimytr
- Page 65 and 66: npplot 65DetailsValuenpplot is a ge
- Page 67 and 68: npplot 67year.seq
- Page 69 and 70: npplot 69# npplot(). When npplot()
- Page 71 and 72: npplreg 71## S3 method for class 'c
- Page 73 and 74: npplreg 73residR2MSEMAEMAPECORRSIGN
- Page 75 and 76: npplreg 75# Plot the regression sur
- Page 77: npplregbw 77and dependent data), an
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- Page 83 and 84: npqcmstest 83npqcmstestKernel Consi
- Page 85 and 86: npqcmstest 85Author(s)Tristen Hayfi
- Page 87 and 88: npqreg 87ftol = 1.19209e-07,tol = 1
- Page 89 and 90: npqreg 89Li, Q. and J.S. Racine (20
- Page 91 and 92: npreg 91Usagenpreg(bws, ...)## S3 m
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- Page 95 and 96: npreg 95summary(model)# Use npplot(
- Page 97 and 98: npreg 97# - this may take a few min
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- Page 101 and 102: npregbw 101## S3 method for class '
- Page 103 and 104: npregbw 103ckerorderukertypeokertyp
- Page 105 and 106: npregbw 105ReferencesAitchison, J.
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- Page 109 and 110: npsigtest 109Author(s)Tristen Hayfi
- Page 111 and 112: npindex 111Usagenpindex(bws, ...)##
- Page 113 and 114: npindex 113MAEMAPECORRSIGNif method
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- Page 117 and 118: npindex 117# x1 is chi-squared havi
- Page 119 and 120: npindexbw 119# plotting via persp()
- Page 121 and 122: npindexbw 121methodnmultithe single
- Page 123 and 124: npindexbw 123allows one to deploy t
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- Page 127 and 128: npscoef 127Valueeydatezdaterrorsres
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npscoef 129# We could manually plot
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npscoefbw 131optim.abstol,optim.max
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npscoefbw 133optim.maxattemptsmaxim
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npscoefbw 135ReferencesAitchison, J
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uocquantile 137uocquantileCompute Q
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INDEX 139npconmode, 29npindex, 110n