FULL POSTER SESSION ABSTRACTS466. Vib-1 is required for cellulose utilization in Neurospora crassa. Yi Xiong, Jianping Sun, N. Louise Glass. Department of Plant and Microbial Biology,Univ California, Berkeley, Berkeley, CA.Vib-1 (vegetative incompatibility blocked) encodes a transcriptional regulator that is required for nonself recognition and heterokaryon incompatibility inNeurospora crassa. It is also required for the production of extracellular proteases upon carbon and nitrogen starvation. We found that vib-1 null mutantwas severely defective in utilizing cellulose as a carbon source and this growth defect could be rescued by constitutively expressing clr-2, an essentialtranscription factor for cellulase gene expression. Our transcriptional profiling with RNA-seq showed that most genes that were induced in wild type oncellulose were not induced in the vib-1 null mutant, but were expressed in vib-1 null mutant under non-inducing conditions when clr-2 transcription factorwas constitutively expressed. Our data suggests that vib-1 functions in a signaling pathway upstream of clr-2 for cellulose utilization. By comparing thetranscriptomes of vib-1 and clr1/clr-2 mutants versus wild type in response to different carbon sources including sucrose and cellulosic materials as well ascarbon and nitrogen starvations, we differentiated vib-1 dependent gene expression into several categories. We propose that vib-1 may play an importantrole in carbon starvation signaling ,thus positively regulating preparation for utilization of cellulosic materials.467. The stringency of start codon selection in the filamentous fungus Neurospora crassa. Jiajie Wei 1 , Ying Zhang 1 , Ivaylo P. Ivanov 2 , Matthew S. Sachs 1 .1) Dept Biol, Texas A&M Univ, College Station, TX; 2) BioSciences Institute, University College Cork, Ireland.In eukaryotic cells, initiation may occur from near-cognate codons that differ from AUG by a single nucleotide. The stringency of start codon selectionimpacts the efficiency of initiation at near-cognate codons and the efficiency of initiation at AUG codons in different contexts. We used a codon-optimizedfirefly luciferase reporter initiated with AUG or each of the nine near-cognate codons in preferred context to examine the stringency of start codonselection in the model filamentous fungus Neurospora crassa. In vivo results indicated that the hierarchy of initiation at start codons in N. crassa (AUG >>CUG > GUG > ACG > AUA » UUG > AUU > AUC) is similar to that in human cells. Similar results were obtained by translating mRNAs in a homologous N.crassa in vitro translation system or in rabbit reticulocyte lysate. We next examined the efficiency of initiation at AUG, CUG and UUG codons in differentcontexts in vitro. The preferred context was more important for efficient initiation from near-cognate codons than from AUG. These studies demonstratedthat near-cognate codons are used for initiation in N. crassa. Such events could provide additional coding capacity or have regulatory functions. Analysesof the 5’-leader regions in the N. crassa transcriptome revealed examples of highly conserved near-cognate codons in preferred contexts that could extendthe N-termini of the predicted polypeptides.468. A temperature-dependent complex transcriptional network controls cell shape and virulence in Histoplasma capsulatum. Sinem Beyhan 1 , MatiasGutierrez 1 , Mark Voorhies 1 , Anita Sil 1,2 . 1) Microbiology and Immunology, University of California, San Francisco, San Francisco, CA; 2) Howard HughesMedical Institute, Chevy Chase, MD.Histoplasma capsulatum, which is a respiratory fungal pathogen of humans, is endemic in the United States. Depending on the exposure dose and theimmune status of the host, the infection can lead to mild-respiratory or life-threatening and systemic disease. H. capsulatum has a dimorphic life cycle,switching from an infectious filamentous form in the soil to a pathogenic yeast form in mammalian hosts. This morphological switch, which requires adramatic shift in the gene expression profile of the cells, can be easily recapitulated in the laboratory simply by changing the temperature from roomtemperature to 37°C. We previously identified three regulators, Ryp1, Ryp2 and Ryp3, which are required for the yeast-phase growth. ryp1, ryp2 and ryp3mutants are unable to respond to change in temperature and grow constitutively in the filamentous form even at 37°C. Ryp1 belongs to a conservedfamily of fungal proteins that regulate cellular differentiation in response to environmental signals. The best-studied member of this family of proteins isWor1, which is a master regulator of white-to-opaque switching in Candida albicans. Ryp2 and Ryp3 are orthologous to VosA and VelB, respectively, whichare developmental regulators in Aspergillus nidulans. In this study, using transcriptional profiling and chromatin immunoprecipitation (ChIP) experiments,we explored complementary and unique roles of Ryp1, Ryp2, and Ryp3 in regulating yeast-phase growth. Our results reveal that Ryp1, Ryp2 and Ryp3physically interact and associate with DNA throughout the genome. Additionally, we identified a fourth transcription factor, Ryp4, which is a direct targetof Ryp1, Ryp2 and Ryp3, as a novel regulator of yeast-phase growth in H. capsulatum. Further transcriptional profiling and ChIP experiments show thatRyp4 regulates and associates with the upstream regions of a subset of Ryp1, Ryp2, and Ryp3 targets, which are involved in morphology and virulence in H.capsulatum. Finally, we identified two distinct cis-regulatory elements that are utilized by Ryp1 or the Ryp2/Ryp3 complex to facilitate gene expression.Our results reveal a tightly regulated and interwoven transcriptional network that controls the ability of a pathogenic fungus to cause disease in responseto host temperature.469. Evolutionary analysis of Dicer proteins: a preliminary analysis to study of microRNAs in the mushroom, Coprinopsis cinerea. Xuanjin Cheng, HoiShan Kwan. Life Sciences, The Chinese University of Hong Kong, New Territory, Hong Kong.Coprinopsis cinerea is a mushroom of limited edible value and is extensively used as a model organism to study the development of homobasidiomycetefungi. Unraveling the molecular basis of the fungus developmental processes would contribute to evolutionary studies and lead to improvement in thebreeding and cultivation of edible or medical homobasidiomycete mushrooms. MicroRNA (miRNA) is a group of endogenous non-coding regulatory RNAsof ~22 nt that regulate gene expression in various biological processes such as cell differentiation, development regulation and heterochromatinformation. Dicer is a key enzyme involved in the biogenesis of miRNAs and is highly conserved through eukaryotes. A miRNA-like RNA cannot be defined asa miRNA unless a Dicer (or Dicer-like) protein is found participating in its biogenesis. There are three Dicer homologs (CC1G_00230, CC1G_03181,CC1G_13988) identified in the C. cinerea genome. In order to gain an insight into the roles of Dicer proteins in C. cinerea and to investigate whether Diceris involved in miRNA biogenesis, we employed a comprehensive phylogenetic analysis of the Dicer protein family in all of the three kingdoms underEukaryota - animal, plant and fungus - and highlighted the results of Dicer homologs in C. cinerea. We showed that Dicer genes duplicated and diversifiedindependently in early animal, plant and fungus evolution, coincident with the origins of multicellularity. Besides, identified a group of Dicer homologs thatare specific to mushroom-forming fungi. We also showed that changes in one of the Dicer domains, the double-stranded RNA binding domain (dsRBD),alone may lead to diversification of Dicer proteins. As a whole, we revealed a dynamic picture in which the evolution of Dicer proteins has drivenelaboration of parallel RNAi functional pathways in the animal, plant and fungus kingdoms.470. Effect of the trp1 gene on transformation frequencies in Coprinopsis cinerea. Bastian Doernte, Ursula Kües. Molecular Wood Biotechnology andTechnical Mycology, University of Goettingen, Germany.Genetic transformation of the basidiomycete Coprinopsis cinerea has first been described by Binninger et al. in 1987 (1). For the transfer of geneticmaterial, chromosomal integrative vectors are used, which contain a selectable marker gene and/or a gene of interest. During transformation the geneticmaterial integrates at ectopic sites into the host chromosomes. Binninger et al. (1987) created the vector pCc1001, by cloning a 6.5 kb PstI genomic236
FULL POSTER SESSION ABSTRACTSfragment, with the tryptophan synthetase gene (trp1) of C. cinerea, into the ColE1 vector pUC9. The inserted gene allows the complementation of trp1auxotrophies and can be used as a selection marker. Several transformation experiments using this vector reveal a surprising phenomenon. Singletransformationwith solely pCc1001 gives only low numbers of transformants, whereas co-transformation with an additional plasmid yields about 2x moretransformants. To explore this phenomenon, the length of the trp1 harboring fragment was changed and the existing replicon was replaced by a modifiedColE1 replicon. All single-transformations resulted in the same observations. An alternative selection marker (pab1 encoding) and different relative vectorvectorconcentrations were tested in several co-transformation experiments. The obtained results lead to the conclusion that tryptophan feedbackinhibition might be responsible for the reduced transformation efficiencies in single-transformations of trp1 vectors. (1) Binninger et al. (1987). DNAmediatedtransformation of the basidiomycete Coprinus cinereus. EMBO J 6:835-840.471. The first promoter for conditional gene expression in Acremonium chrysogenum: iron starvation-inducible mir1 P . Fabio Gsaller 1 , Michael Blatzer 1 ,Beate Abt 1 , Markus Schrettl 2 , Herbert Lindner 3 , Hubertus Haas 1 . 1) Christian Doppler Laboratory for <strong>Fungal</strong> Biotechnology, Division of Molecular Biology,Medical University of Innsbruck, Austria; 2) Sandoz GmbH, Kundl, Austria; 3) Division of Clinical Biochemistry, Medical University of Innsbruck, Austria.The filamentous fungus Acremonium chrysogenum is of enormous biotechnological importance as it represents the natural producer of the beta-lactamantibiotic cephalosporin C. However, a limitation in genetic tools, e.g. promoters for conditional gene expression, impedes genetic engineering of thisfungus. Here we demonstrate that in A. chrysogenum iron starvation induces the production of the extracellular siderophores dimerumic acid, coprogen B,2-N-methylcoprogen B and dimethylcoprogen as well as expression of the putative siderophore transporter gene, mir1. Moreover, we show that thepromoter of mir1, mir1 P , is suitable for conditional expression of target genes in A. chrysogenum as shown by mir1 P -driven and iron starvation-inducedexpression of genes encoding green fluorescence protein and phleomycin resistance. The obtained iron-starvation dependent phleomycin resistanceindicates the potential use of this promoter for selection marker recycling. Together with easy scorable siderophore production, the co-regulation of mir1expression and siderophore production facilitates the optimization of the inducing conditions of this expression system. This work was funded by SandozGmbH (Kundl, Austria) and the Christian Doppler Society (Vienna, Austria).472. Mutagenic effect of high-LET ion beam irradiation in Neurospora crassa. Liqiu Ma 1* , Yusuke Kazama 2 , Tomoko Abe 2 , Shuuitsu Tanaka 1 , ShinHatakeyama 1 . 1) Regulation Biol, Saitama Univ, SAITAMA, Japan; 2) Radiation Biology Team, RIKEN, SAITAMA, Japan.Heavy ion beams cause great damages to cellular components particularly generating severe DNA damages, DNA double strand breaks (DSBs). Weexamined the biological effect and mutagenesis of irradiation of high-LET ion beam (Fe-ion) to DSB repair defect mutants in filamentous fungus Neuosporacrassa. Fe-ion beam ( 56 Fe 24+ : 90 MeV/u, LET=641 keV/mm) was irradiated to two DSB repair deficient mutants and wild-type strain. By lower doses (100 Gy), sensitivity to irradiation of the mus-52 strain (non-homologousend-joining deficient) is higher than that of the wild type, whilst lower than that of the mei-3 strain (homologous recombination deficient). Frequency offorward mutation occurred in the ad-3 loci was similar to previously examined C-ion beam irradiation, i.e. mei-3 > wild type > mus-52 strains. However,characteristic difference of mutation was observed as the scale of deletions; large deletions were frequently in the Fe-ion beam irradiated wild type strain,comparing to that 1 bp-deletions were mainly observed in the C-ion irradiation. Differences of mutagenesis and killing effect between the irradiation oftwo heavy ions, Fe-ion and C-ion, were discussed based on types of DNA damages.473. The Mad complex binds to light-regulated promoters in Phycomyces blakesleeanus. Alejandro Miralles-Duran, LM Corrochano. Genetica, Facultadde Biologia, University of Sevilla, Sevilla, Spain.The zygomycete Phycomyces blakesleeanus responses to light include phototropism of the fruiting body, activation of beta-carotene biosynthesis, andregulation of fruit body development. These photoresponses require the Mad complex, a protein complex composed of proteins MadA and MadB. Theseproteins are homologous of WC-1 and WC-2 from Neurospora crassa and presumably play a similar role in the regulation by light of gene expression.MadA and MadB have a zinc finger domain at the carboxyl end, and MadA has a LOV domain that should serve as the binding site for a flavinchromophore. In Phycomyces, the Mad complex should operate as a photoreceptor and transcription factor complex. The Phycomyces genome containstwo additional wc-1 homologs, wcoA and wcoB, and three additional wc-2 homologs, wctB, wctC, and wctD, but their function is unknown. We haveexpressed MadA and MadB in E. coli, and we have shown that these proteins bind the promoter of the light-regulated gene hspA by electrophoresismobility shift assays (EMSA). Protein binding to the hspA promoter was observed with each isolated protein or with the two proteins associated in theMad complex. The binding site to the hspA promoter will be identified by DNA footprinting analysis. We are performing similar assays with the otherPhycomyces Wc proteins and we hope that the results will help us to understand the role of the multiple Wc proteins in light-dependent gene regulation inPhycomyces.474. Down Regulation of sidB Gene by Use of RNA interference Technology in the Filamentous Fungi Aspergillus nidulans. S, Rezaie 1,2 , H, Eslami 1 , M.R.Khorramizadeh 1 , M.R. Pourmand 1 , M. Moazeni 2 . 1) Medical Biotechnology Dept, Tehran University of Medical Sciences, PhD; 2) Div. of Molecular Biology,Dept. of Medical Mycology and Parasitology, Tehran University of Medical Sciences, PhD.Background: RNA interference (RNAi) is a natural process by which short double-stranded RNA (siRNA) silences the expression of complementary targetRNAs by inducing RNA cleavage and subsequent reduction in protein expression levels. Introduction of the RNA interference machinery has guided theresearchers to discover novel methodologies for knocking down essential vital factor or virulence factor genes in the microorganisms such as fungi. Infilamentous fungi, Aspergillus nidulans, the gene sidB plays essential role in septation, conidiation and vegetative hyphal growth. In the present study, webenefited from the RNA interference strategy for down-regulating of a vital gene in the fungus Aspergillus nidulans. Materials and Methods: The 21-nucleotide siRNA was designed on the basis of the cDNA sequence of the sidB gene of A. nidulans. Transfection was performed via uptaking siRNAs frommedium by germinated spores. After 18 hours of incubation, total RNA was extracted and quantitative changes in expression of the sidB gene wereanalyzed by measuring the cognate sidB mRNA level by use of a quantitative real-time RT-PCR assay. Results: In the presence of 25 nM of siRNA, asignificant inhibition in germ tube elongation was observed compared with positive control samples (21 VS 42 mM). In addition, at the concentration of 25nM , a considerable decrease in sidB gene expression was revealed. Conclusion: Usage of RNA interference as a kind of post-transcriptional gene silencingmethods is a promising approach for designing new antifungal agents and discovering new drug delivery systems.475. SmallRNA mediated meiotic silencing of a transposable element in Neurospora crassa. Yizhou Wang, Jason E. Stajich. Plant Pathology &Microbiology, Univ. of CA, Riverside, Riverside, CA.Meiotic silencing of unpaired DNA plays an important role in protecting the genome integrity of Neurospora crassa. It is thought to fight against theinvasion of virus and endogenous transposable elements. Our previous work has shown that a 10 KB MULE (mutator-like element)-related DNA<strong>27th</strong> <strong>Fungal</strong> <strong>Genetics</strong> <strong>Conference</strong> | 237
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LIST OF PARTICIPANTSAric E WiestUni