CONCURRENT SESSION ABSTRACTSquantifying their usage under different nutritional conditions (rich and minimal media, carbon and nitrogen starvation) in the wild type and the Drbp35mutant. Results of these polyadenylation maps will be presented, including candidate APA targets, sequence motifs present in long 3' UTRs, Rbp35-dependent mRNA isoforms, and conservation of significant mRNA isoforms in other filamentous fungi.Post-transcriptional gene regulation contributes to host temperature adaptation and virulence in Cryptococcus neoformans. Amanda L. MisenerBloom 1,2 , Kurtis Downey 1 , Nathan K. Wool 1 , John C. Panepinto 1,2 . 1) Microbiology/Immunology, SUNY University at Buffalo, Buffalo, NY; 2) Witebsky Centerfor Microbial Pathogenesis and Immunology, SUNY University at Buffalo, Buffalo, NY.In response to the hostile host environment, pathogens must undergo rapid reprogramming of gene expression to adapt to the stresses they encounter.Upon exposure to host temperature, Ribosomal protein (RP) transcripts are rapidly repressed in C. neoformans. We are interested in investigating specificmechanisms involved in this response, as this repression may be a critical process in host temperature adaptation. Using a mutant null of the majordeadenylase, Ccr4, we have discovered that this repression is in part due to enhanced degradation of RP-transcripts. Ccr4 lacks a nucleic acid bindingdomain and therefore must be recruited to mRNA targets via RNA binding proteins. Using MEME analysis and chromatographic techniques, we haveidentified a shared cis element in the 3’UTR of RP transcripts that is recognized by the zinc knuckle protein, Gis2. We are currently investigating theimportance of this protein-RNA interaction in the expression of RP genes.Host temperature-induced enhanced degradation of RP transcripts is also dependent on the dissociable RNA polymerase II subunit, Rpb4. Specifically, wedemonstrated that in an rpb4D mutant, RP-transcript deadenylation is impaired, suggesting that Rpb4 may be required for Ccr4-targeted degradation. Inaddition, we observed that upon a shift to 37°C, Rpb4 travels from the nucleus to the cytoplasm, supporting a role for Rpb4 in coupling transcription anddegradation. Interestingly, this coupling is not restricted to the RP transcripts, as Rpb4 is also involved in enhanced decay of ER stress transcripts followingtheir peak induction, one hour after a shift to host temperature. We have demonstrated that signaling through PKH enhances the degradation of the RPtranscriptsin response to host temperature, but not the ER stress transcripts, highlighting the complexity of this system. We report that whentranscription and degradation are uncoupled by the loss of Rpb4, growth at host temperature is impaired and virulence in a mouse model of disseminatedcryptococcosis is attenuated. Our data suggests that coupling of transcription and degradation via Rpb4 allows the cell to control the intensity andduration of different responses at specific times following exposure to host temperature, contributing to the ability of C. neoformans to adapt to thisstress.Dual targeting of glycolytic enzymes by alternative splicing and translational read-through. Johannes Freitag, Julia Ast, Alina Stiebler, Michael Bölker.Department of Biology, Philipps-Universität Marburg, Marburg, Germany.Processing of mRNA is a highly conserved process in eukaryotes involving three major steps. Nascent transcripts are capped at their 5’end, introns areremoved by splicing and the 3’end is cleaved and polyadenylated. In the plant pathogenic fungus Ustilago maydis, several genes show hallmarks ofdifferential splicing and alternative polyadenylation resulting in the production of C-terminally extended proteins. We detected that this process leads togeneration of an extended glyceraldehyde-3-phosphate dehydrogenase (GAPDH) isoform harboring a C-terminal peroxisomal targeting sequence (PTS1).We could also detect peroxisomal isoforms of two further glycolytic enzymes, phosphoglycerate kinase (PGK) and triosephosphate isomerase (TPI).Remarkably, peroxisomal isoforms of PGK and TPI are generated by translational read-through in U. maydis. Further analysis revealed that dual targetingof glycolytic enzymes to peroxisomes and the cytoplasm is not restricted to U. maydis but occurs in a variety of fungal species. Interestingly, in differentspecies variable mechanisms to generate extended peroxisomal isoforms of glycolytic enzymes are operating. In the ascomycete Aspergillus nidulans thePTS1-motif of PGK is derived from alternative splicing and polyadenylation, while translational read-through is used to generate a peroxisomal isoform ofGAPDH. We could also show that some enzymes are partially targeted to peroxisomes by means of weak peroxisomal targeting signals. Dual localization ofglycolytic enzymes to peroxisomes and the cytoplasm appears to be widespread in fungi. This indicates that fungal peroxisomes are endowed with a morecomplex metabolism than previously assumed. Thus, the consideration of alternative splicing and translational read-through will be of importance infuture proteomic and metabolomic studies of organelles.Non-optimal codon usage determines the expression level, structure and function of the circadian clock protein FREQUENCY. Mian Zhou 1 , Jinhu Guo 5 ,Joonseok Cha 1 , Michael Chae 1 , She Chen 2 , Jose Barral 3 , Matthew Sachs 4 , Yi Liu 1 . 1) Department of Physiology, UT Southwestern Medical Center, Dallas, TX;2) National Institute of Biological Sciences, Beijing, China; 3) Departments of Neuroscience and Cell Biology and Biochemistry and Molecular Biology, TheUniversity of Texas Medical Branch, Galveston, TX; 4) Departments of Biology, Texas A&M University, College Station, TX; 5) School of Life Sciences, SunYat-sen University, Guangzhou, China.Codon usage bias has been observed in the genomes of almost all organisms and is thought to result from selection for efficient and accurate translationof highly expressed genes 1-3. In addition, codon usage is also implicated in the control of transcription, splicing and RNA structure 4-6. Many genes,however, exhibit little codon usage bias. The lack of codon bias for a gene is thought to be due to lack of selection for mRNA translation. Alternatively,however, non-optimal codon usage may also have biological significance. The rhythmic expression and the proper function of the Neurospora FREQUENCY(FRQ) protein are essential for circadian clock function. Here, we show that, unlike most genes in Neurospora, frq exhibits non-optimal codon usage acrossits entire open reading frame. Optimization of frq codon usage results in the abolition of both overt and molecular circadian rhythms. Codon optimizationnot only increases FRQ expression level but surprisingly, also results in conformational changes in FRQ protein, impaired FRQ phosphorylation, andimpaired functions in the circadian feedback loops. These results indicate that non-optimal codon usage of frq is essential for its circadian clock function.Our study provides an example of how non-optimal codon usage is used to regulate protein expression levels and to achieve optimal protein structure andfunction.A transcriptome-wide view on microtubule-dependent mRNA transport. Carl Haag 1 , Julian Konig 2 , Kathi Zarnack 3 , Michael Feldbrugge 1 . 1) Institut forMicrobiology, Heinrich-Heine University, Düsseldorf, NRW, Germany; 2) MRC LMB Cambridge, UK; 3) EBI Hinxton, UK.Long distance transport of mRNAs regulates spatio-temporal gene expression during polar growth. In filaments of U. maydis, for example, microtubuledependentshuttling of mRNAs is crucial to determine the axis of polarity. The key component of this transport system is the RNA-binding protein Rrm4that binds a distinct set of target mRNAs. Recently, we discovered a novel mechanism for mRNA transport, namely the co-transport of Rrm4 andassociated mRNAs with endosomes. Here, new insights on mRNA transport will be presented using the improved in vivo UV-crosslinking technique: iCLIP.This technique allows identification of target mRNAs at the transcriptome-wide level with single nucleotide resolution.54
CONCURRENT SESSION ABSTRACTSThursday, March 14 3:00 PM–6:00 PMKilnInteractions between Fungi and AnimalsCo-chairs: Neil Gow and Clarissa NobileElicitation of host damage occurs in a temporally programmed manner during Aspergillus fumigatus infections. Elaine M. Bignell. Microbiology Section,Imperial College London, London, United Kingdom.Background: In tissue-invasive lung infections caused by the mould Aspergillus fumigatus the molecular basis of host damage remains unclear. It has longbeen hypothesised that the secretion of proteolytic enzymes by invading A. fumigatus hyphae provides a mechanism by which epithelial damage ismediated. However, in whole animal studies of disease it has not been possible to substantiate an important role of fungal proteases since A. fumigatusmutants lacking individual or multiple enzyme functions retain the ability to cause fatal infections. One of the first cellular lines of defence against A.fumigatus infection is the monolayer of epithelial cells which line the mammalian airway. Epithelial cells provide a physical barrier against endothelialinvasion and initiate an inflammatory immune response upon contact with A. fumigatus spores. Here we show that the A. fumigatus pH-responsivetranscription factor, PacC, which governs expression of secreted proteases and secondary metabolism genes, is required for invasion of the murinepulmonary epithelium, and pathogenicity. Results: We determined, via murine and epithelial infection assays, that DpacC mutants are defective inelicitation of early-phase host damage which occurs, in wild type isolates, via a novel contact-dependent mechanism. Transcriptomic analyses of murineaspergillosis revealed aberrant cell wall biosynthesis in infecting DpacC isolates, suggesting a novel role for the A. fumigatus cell wall in pathogen-mediatedhost damage. Concordant with these findings PacC null mutants were shown to have signficiantly heightened chitin content in the fungal cell wall andwere hypersensitive to cell wall perturbing agents, including caspofungin. The mechanistic relevance of cell wall-mediated host damage was verified bycomparative analysis of damage elicited by cell wall extracts and heat-killed hyphae from wild type and DpacC isolates. Conclusion: A. fumigatus elicitshost damage in a biphasic manner, initally via a novel contact-dependent mechanism involving cell wall components, and later via soluble mediators. A.fumigatus mutants deficient in the pH-responsive transcription factor PacC suffer deficits in both mechanisms. On the basis of this functionaltranscriptomic analysis we propose a new model of biphasic host damage during A. fumigatus infections.Exploiting innate recognition of fungi for vaccine development. Stuart Levitz. Medicine, University of Massachusetts, Worcester, MA.Most licensed vaccines work by promoting protective antibody responses. However, some populations, such as the elderly and theimmunocompromised, generally have poor antibody responses to conventional vaccines. Moreover, for many infectious and neoplastic diseases, vaccinesthat arm adaptive T cell responses appear necessary. Thus, a major challenge in vaccinology is the development of platforms and adjuvants that effectivelypromote protective T cell and antibody responses. The immune system has evolved to innately recognize components of the fungal cell wall, particularly b-glucans. Research in my laboratory, in collaboration with Gary Ostroff, has focused on how this innate recognition of the fungal cell wall can be exploitedfor vaccine development. To achieve this aim, we have used glucan particles (GPs) as a novel vaccine platform. GPs are hollow, highly purifiedmicrocapsules prepared from Saccharomyces cerevisiae cell walls. GPs are composed predominantly of b-1,3-glucan and are recognized by b-glucanreceptors (particularly Dectin-1) on dendritic cells and other phagocytes. GPs also potently activate complement, resulting in opsonization and recognitionby complement receptors. GPs can be loaded with antigens and immunomodulators such that the “payload” is released following phagocytosis. We havedemonstrated robust and long-lasting antigen-specific T cell (Th1- and Th17-biased) and antibody responses following immunization of mice with GPs“encapsulated” with antibody. Moreover, vaccination of mice with GPs loaded with fungal antigens can protect mice against lethal challenges with thepathogenic fungi Cryptococcus neoformans and Histoplasma capsulatum.Regulatory circuits governing Candida albicans proliferation in a mammalian host. Jose C. Perez 1 , Carol A. Kumamoto 2 , Alexander D. Johnson 1 . 1)Microbiology and Immunology, UCSF, San Francisco, CA; 2) Molecular Biology and Microbiology, Tufts University, Boston, MA.The fungus Candida albicans resides in the gastrointestinal tract of most, if not all, human adults and is also a leading cause of life-threatening fungalinfections in immunocompromised individuals. C. albicans has no known environmental reservoir suggesting that it has extensively co-evolved to thrive inits host. To uncover the C. albicans gene circuits governing its proliferation in a host, we used mouse models of intestinal colonization and systemicinfection to screen a set of ~75 transcription regulator deletion strains. These mutant strains were chosen because they showed no gross phenotypeswhen cultured under a variety of laboratory growth conditions. We identified eight transcription regulators that play roles in intestinal colonization,systemic infection or both. Through genome-wide chromatin immunoprecipitation and transcriptional profiling experiments, we determined the targetgenes and the general circuitry controlled by these regulators. Our results reveal multiple biological functions necessary for C. albicans to inhabit amammalian host, the acquisition of carbon and nitrogen sources being prominent among them. These findings highlight common challenges faced bybacterial and eukaryotic (fungal) species when colonizing the mammalian intestine and illustrate how evolution has tinkered with the C. albicansregulatory circuitry to meet these demands.Dramatic ploidy change as an adaptive strategy in Candida albicans... Meleah A. Hickman, Ben Harrison, Darren Abbey, Anja Forche, Carsten Paulson,Kathleen Matter, Judith Berman. Dept Gen, Cell Biol & Dev, Univ Minnesota, Minneapolis, MN.For over 100 years, Candida albicans has been considered an obligate diploid, although it clearly tolerates single chromosome aneuploidy as well as longtracts of homozygosity. We recently identified tetraploid, triploid as well as intriguing reductions to below diploid C. albicans cells, some from the clinic,others from a mouse host and others following stress exposure in vitro. Tetraploidy arises either through parasex (mating between diploid cells) or defectsin mitosis. Stress conditions, including exposure to the antifungal drug flucanozole, increase the frequency of tetraploid formation. The polyploid state isrelatively unstable even under standard laboratory conditions and loss of a heterozygous marker increases by an order of magnitude as compared todiploid populations. A small subset of tetraploid cells return to a near diploid state very rapidly even without exposure to the stresses usually used toinduce concerted chromosome loss. The diploid derivatives of polyploid cells exhibit a wide range of chromosome aneuploidies and homozygosities, thusgenerating a wide range of genetic diversity within a single population. Evolution experiments with fluconazole suggest that diploid cells undergo transientpolyploidization in response to fluconazole and that polyploid cells adapt to stress conditions more rapidly.<strong>27th</strong> <strong>Fungal</strong> <strong>Genetics</strong> <strong>Conference</strong> | 55
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