Answers to HW Questions

More documents

Recommendations

Info

1.14. Contrast quadrupole MS detection with fluorescence and absorbancespectroscopy in terms of:Figure of Merit q-Mass Spec Fluorescence AbsorbanceSensitivity+++++++++++milli -3 micro -6nano -9 pico -12femto -15 atto -18yocto -21SelectivityGeneralityng (10 -9 g)++++++++Especially withfragmentationpattern recognition.+++++++++++++Pretty muchanything can give aion fragment!yg (10 -21 g)+++++Fluorescence is notthat common.+?+?+?+?+Only selective if afluorphore can beattached selectively toyour target.Destructive or non? destructive semi-destructivethrough labelnM conc. DL+Many interferantsnormally possible.++Lots of moleculesexhibit a UV abs.,all have IR abs.non-destructiveSample Size RequirednL (MALDI) to100 uL (ESI)pL + microscope0.1 mL – 1.0 mLSpeedMedium to fast(instrumentdependent, sampleprep dependent)Slow(assumebiolabeling to makeselectivity)Fast(simplemeasurement)CostHigh(instrument)Medium(instrument +enzymes + labor)lowInstrument size big med Small
Questions we have answered:Chem 250 Fall 2008Answers to questions given in class 8.27.081.15. A strong cation exchange resin contains sulfonic acid (a strong acid) residues.Assume the solution pH is 7.5.1.15.1. Will all proteins bind to this resin?No, a cation exchange resin has anionic (strong acid) groups on the surface such as R-SO3 - . Therefore it will bind proteins that are either net cationic or that have at least somepatches of positive charge on the surface. It will not bind purely anionic proteins. It willnot bind proteins with a pI above the buffer pH = 7.5.1.15.2. How will proteins bind to this resin?Electrostatic attraction between cationic (lysine and arginine) groups on the protein’speriphery and sulfonates on the resin.1.15.3. Will this be a mono- or multi-valent binding interaction? (Note thatmultivalent interactions such as DNA duplexation have characteristicallysharp association isotherms.)The likelihood is that this will be multivalent. The more lysine groups on the proteinsurface, the more points of attraction and the stronger the binding.1.15.4. Why would increasing ionic strength of, e.g. NaCl decrease thestrength of this binding interaction?Increasing ionic strength will tend to elute the protein. One can think of this as acompetitive binding effect (like the Na + in the solution competes with lysine + for thesulfonate) or as a charge screening effect wherein at high ionic strength ions in solutionsimply tend to cancel electric fields and prevent the normal electrostatic interactions fromextending beyond a few angstroms.1.15.5. On what basis will this separation work?The separation will work on the basis of the strength of the cation-anion attractionbalanced against the solvating (enthalpic) and liberating (entropic) energies of releasingthe protein.1.16. On what basis does reverse-phase chromatography separate analytes?Hydrophobicity – or, the tendency of non-polar components of the solution to stick to orpartition into the oily coating on the chromatographic stationary phase.
Page 1 and 2: AnswersChem 250 Unit 1 - Proteomics
Page 3: Questions that are more specific to

Answers to HW Questions

Create successful ePaper yourself

Delete template?

Save as template?