Molecular Biology Databases - CNB - Protein Design Group

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EMBL AND SwissProt FORMATThe field name is specified by a TWO CHARACTER keyword, in the beginningof each line, what makes easier to parse the file to extract specific information.ID BSBOFCGEN standard; genomic DNA; PRO; 2664 BP.XXAC X93081;XXSV X93081.1XXDT 15-APR-1997 (Rel. 51, Created)DT 15-APR-1997 (Rel. 51, Last updated, Version 12)XXDE B.subtilis bofC, orf1, csbX, and orf4 genesXXKW bofC gene; csbX gene; ORF1; ORF4.XXOS Bacillus subtilisOC Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus.XX
EMBL AND SwissProt FORMATRN [1]RX MEDLINE; 97177783.RX PUBMED; 9025289.RA Gomez M., Cutting S.M.;RT "BofC encodes a putative forespore regulatorRT of the Bacillus subtilis sigma K checkpoint";RL Microbiology 143:157-170(1997).XXXXDR GOA; O05389.DR GOA; O05390.DR GOA; O05391.DR GOA; O05392.DR SWISS-PROT; O05389; YRBE_BACSU.DR SWISS-PROT; O05390; CSBX_BACSU.DR SWISS-PROT; O05391; BOFC_BACSU.DR SWISS-PROT; O05392; RUVA_BACSU.
Page 1 and 2: MOLECULAR BIOLOGYDATABASESJuan Carl
Page 3 and 4: Ouellette, 2000
Page 5 and 6: GROWING NUMBER OF DATABASESThe numb
Page 7 and 8: HOW TO ACCESS DATABASESDatabases ar
Page 9 and 10: CONTENT OF PRIMARY DATABASESExperim
Page 11 and 12: CLASSIFICATION OF MOLECULARBIOLOGY
Page 13 and 14: DATABASE SEARCHES:QUERY TYPESTEXT Q
Page 15 and 16: DATABASE SEARCHES:QUERY TYPESQUERIE
Page 17 and 18: NUCLEOTIDE DATABASESGenBank• Main
Page 19 and 20: GENOME DATABASESEnsemblEnsembl, EBI
Page 21 and 22: GENOME DATABASESEntrez Genome• In
Page 23 and 24: GENE-CENTERED DATABASESComplete inf
Page 25 and 26: PROTEIN DATABASESNon-redundant data
Page 27 and 28: PROTEIN DATABASESUniProtKB/Swiss-Pr
Page 29 and 30: STRUCTURE DATABASESProtein Data Ban
Page 31 and 32: PROTEIN DOMAINS DATABASESProtein do
Page 33 and 34: GENE EXPRESSION DATABASESGene expre
Page 35 and 36: PATHWAY DATABASESDisplay metabolic
Page 37 and 38: ONTOLOGIES IN MOLECULAR BIOLOGYCont
Page 39 and 40: GENE ONTOLOGYDeveloped and maintain
Page 41 and 42: GenBank and EMBL● GenBank and the
Page 43 and 44: • Entrez is the indexing and data
Page 45 and 46: MAIN DATABASESACCESIBLE WITH ENTREZ
Page 47: FASTA format> essentialGIAccession.
Page 50 and 51: GBFF: FEATURESFEATURESLocation/Qual
Page 54 and 55: EMBL AND SwissProt FORMATFT source
Page 58 and 59: • Sequence Retrieval System is a
Page 60: ACKNOWLEDGMENTSThis presentation co

Molecular Biology Databases - CNB - Protein Design Group

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