Molecular Biology Databases - CNB - Protein Design Group

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EMBL AND SwissProt FORMATFT source 1..2664FT /db_xref="taxon:1423"FT /germlineFT /mol_type="genomic DNA"FT /organism="Bacillus subtilis"FT /strain="PY79"FT /isolate="168"FT CDS
EMBL AND SwissProt FORMATXXSQ Sequence 2664 BP; 670 A; 518 C; 690 G; 786 T; 0 other;ctgcagcggc tgacaatagc aggccgacaa cggttgaggt gtcaacagct gattttgtga 60tgaaggataa accgcatttc tttttccttg aacgctataa ggattcatat gaggaggaga 120ttctccgttt tgcagaagcg atcggcacaa accaggagac tccctgcacc ggcaatgacg 180gtttacaggc cgggaggatc gccagagcag cacagcaatc gcttgctttt ggcatgcctg 240ttagcattga gcacactgaa aaaatcgctt tttaatctaa caggattaca attcagcaag 300cttgggtata tactccattg atactttaag taggcggtgg agaaaatgaa tacagtacat 360gctaaaggaa atgttttgaa caaaatcgga attccttctc acatggtttg gggttatatt 420ggcgttgtca tctttatggt tggagacggc ctcgaacaag gctggctgtc tccttttctc 480//
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MOLECULAR BIOLOGYDATABASESJuan Carl
Page 3 and 4: Ouellette, 2000
Page 5 and 6: GROWING NUMBER OF DATABASESThe numb
Page 7 and 8: HOW TO ACCESS DATABASESDatabases ar
Page 9 and 10: CONTENT OF PRIMARY DATABASESExperim
Page 11 and 12: CLASSIFICATION OF MOLECULARBIOLOGY
Page 13 and 14: DATABASE SEARCHES:QUERY TYPESTEXT Q
Page 15 and 16: DATABASE SEARCHES:QUERY TYPESQUERIE
Page 17 and 18: NUCLEOTIDE DATABASESGenBank• Main
Page 19 and 20: GENOME DATABASESEnsemblEnsembl, EBI
Page 21 and 22: GENOME DATABASESEntrez Genome• In
Page 23 and 24: GENE-CENTERED DATABASESComplete inf
Page 25 and 26: PROTEIN DATABASESNon-redundant data
Page 27 and 28: PROTEIN DATABASESUniProtKB/Swiss-Pr
Page 29 and 30: STRUCTURE DATABASESProtein Data Ban
Page 31 and 32: PROTEIN DOMAINS DATABASESProtein do
Page 33 and 34: GENE EXPRESSION DATABASESGene expre
Page 35 and 36: PATHWAY DATABASESDisplay metabolic
Page 37 and 38: ONTOLOGIES IN MOLECULAR BIOLOGYCont
Page 39 and 40: GENE ONTOLOGYDeveloped and maintain
Page 41 and 42: GenBank and EMBL● GenBank and the
Page 43 and 44: • Entrez is the indexing and data
Page 45 and 46: MAIN DATABASESACCESIBLE WITH ENTREZ
Page 47: FASTA format> essentialGIAccession.
Page 50 and 51: GBFF: FEATURESFEATURESLocation/Qual
Page 52 and 53: EMBL AND SwissProt FORMATThe field
Page 58 and 59: • Sequence Retrieval System is a
Page 60: ACKNOWLEDGMENTSThis presentation co
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