12.07.2015 Views

Alignment and Atlases

Alignment and Atlases

Alignment and Atlases

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-58-Detailed example for manual transformation is now in appendix C• Listen up folks, IMPORTANT NOTE:Have you ever opened up the [Define Markers] panel, only to find the AC-PC markersmissing , like this:Gasp! Wheredid they go? There are a few reasons why this happens, but usually itʼs because youʼve made a copyof a dataset, <strong>and</strong> the AC-PC marker tags werenʼt created in the copy, resulting in theabove dilemma.➥ In other cases, this occurs when afni is launched without any datasets in thedirectory from which it was launched (oopsy, your mistake). If you do indeed have an AFNI dataset in your directory, but the markers are missing<strong>and</strong> you want them back, run 3drefit with the -markers options to create an emptyset of AC-PC markers. Problem solved!3drefit -markers

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