eman - NCMI

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Reliable Preliminary Model●●cd ../stage4cat 000scriptThis will refine the raw data vs an initial model we justdetermined. Either copy the stage3 model, or usemakeinitialmodel.pyWhile it runs...●●●●stage4a - refine from a 'makeinitialmodel.py' thatlooks kind of like GroELstage4b - D7 symmetrized random modelstage4c - Single Gaussian blobstage4x - refine from refine2d class averages
Basic Image Processing● iminfo [all] [stat](image information)●●●●proc2d [options](generic 2d image processing)proc3d proc3d [options](generic 3d image processing)procpdb.py [options](simple PDB file processing)
Page 1 and 2: TutorialSession
Page 3 and 4: EMAN2 Documentation●●●●●A
Page 5 and 6: GUI Programs● eman● v2● boxer
Page 7 and 8: Canonical EMAN Refinement●●●
Page 11 and 12: Particle Picking (Boxing)●●cd ~
Page 17: First Preliminary ModelLook at:●
Page 21 and 22: CTF Correction EMANInitial3D Mod
Page 23 and 24: CTF Parameter Determination●●fi
Page 27 and 28: Refine Options●Projection:mask=pr
Page 29 and 30: Refine OptionsREQUIRED:●●●
Page 31 and 32: Refine OptionsOPTIONAL:●●filt3d
Page 33 and 34: Refine OptionsTYPICAL (not required
Page 39 and 40: 2D Analysis Step 2(particle extra
Page 41 and 42: multirefine●●●●No demo data
Page 43 and 44: multirefine●●When multirefine c
Page 45: Generating a Hybrid Structure Facto

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