eman - NCMI

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EMAN1 Documentation●●● denotes a parameter to fill in, ie [] denotes an optional parameter, ie [mask=]italics denote something to be typed into the computerexample:proc2d [mask=] [mrc] [spider] [pgm]proc2d file.hed file.spi spider mask=22● help (won't work with python scripts yet)● (shows usage information)●A few python programs use EMAN2 style options
EMAN2 Documentation●●●●●All programs begin with 'e2' to avoid conflictsStandard unixstyle arguments with '' or ''e2proc2d infile.hdf outfile.hdf edgenorm apix=2.3e2proc2d helpe2help.py (doesn't do a lot yet)
Page 1: TutorialSession
Page 5 and 6: GUI Programs● eman● v2● boxer
Page 7 and 8: Canonical EMAN Refinement●●●
Page 11 and 12: Particle Picking (Boxing)●●cd ~
Page 17 and 18: First Preliminary ModelLook at:●
Page 19 and 20: Basic Image Processing● iminfo [
Page 21 and 22: CTF Correction EMANInitial3D Mod
Page 23 and 24: CTF Parameter Determination●●fi
Page 27 and 28: Refine Options●Projection:mask=pr
Page 29 and 30: Refine OptionsREQUIRED:●●●
Page 31 and 32: Refine OptionsOPTIONAL:●●filt3d
Page 33 and 34: Refine OptionsTYPICAL (not required
Page 39 and 40: 2D Analysis Step 2(particle extra
Page 41 and 42: multirefine●●●●No demo data
Page 43 and 44: multirefine●●When multirefine c
Page 45: Generating a Hybrid Structure Facto

eman - NCMI

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