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What documentation exists for R?

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Chapter 5: R Add-On Packages 53<br />

pls Partial Least Squares Regression (PLSR) and Principal Component Regression<br />

(PCR).<br />

plsgenomics<br />

PLS analyses <strong>for</strong> genomics.<br />

pmg Poor Man’s GUI.<br />

poLCA POlytomous variable Latent Class Analysis.<br />

polspline Routines <strong>for</strong> the polynomial spline fitting routines hazard regression, hazard<br />

estimation with flexible tails, logspline, lspec, polyclass, and polymars, by C.<br />

Kooperberg and co-authors.<br />

polyapost Simulating from the Polya posterior.<br />

polycor Polychoric and polyserial correlations.<br />

polynom A collection of functions to implement a class <strong>for</strong> univariate polynomial manipulations.<br />

popgen Statistical and POPulation GENetics.<br />

portfolio Classes <strong>for</strong> analyzing and implementing portfolios.<br />

portfolioSim<br />

Framework <strong>for</strong> simulating equity portfolio strategies.<br />

powell Optimizes a function using Powell’s UObyQA algorithm.<br />

powerpkg Power analyses <strong>for</strong> the affected sib pair and the TDT design.<br />

ppc Sample classification of protein mass spectra by peak probabilty contrasts.<br />

pps Functions to select samples using PPS (probability proportional to size) sampling,<br />

<strong>for</strong> stratified simple random sampling, and to compute joint inclusion<br />

probabilities <strong>for</strong> Samp<strong>for</strong>d’s method of PPS sampling.<br />

prabclus Distance based parametric bootstrap tests <strong>for</strong> clustering, mainly thought <strong>for</strong><br />

presence-absence data (clustering of species distribution maps). Jaccard and<br />

Kulczynski distance measures, clustering of MDS scores, and nearest neighbor<br />

based noise detection.<br />

prettyR Pretty descriptive stats.<br />

princurve Fits a principal curve to a matrix of points in arbitrary dimension.<br />

proptest Tests of the proportional hazards assumption in the Cox model.<br />

proto An object oriented system using prototype or object-based (rather than classbased)<br />

object oriented ideas.<br />

pscl R in the Political Science Computational Laboratory, Stan<strong>for</strong>d University.<br />

pspline Smoothing splines with penalties on order m derivatives.<br />

psy Various procedures used in psychometry: Kappa, ICC, Cronbach alpha,<br />

screeplot, PCA and related methods.

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