Swiss Medical Informatics - SGMI
Swiss Medical Informatics - SGMI
Swiss Medical Informatics - SGMI
Create successful ePaper yourself
Turn your PDF publications into a flip-book with our unique Google optimized e-Paper software.
thirds of the domain knowledge predicted by our method<br />
is fully valid. Although partial, this result demonstrates<br />
that text-mining methods can automatically generate asignificant<br />
subset of expert medical knowledge as available<br />
in alarge text repository such as the MEDLINE digital library.<br />
Asafuture task we plan touse alternative corpora<br />
such asClearingHouse (www.guidelines.gov), which can<br />
be used as avaluable complement to MEDLINE for clinical<br />
guidelines and evidence-based medicine. Our approach<br />
should then be integrated into an interactive tool<br />
for creating and validating rules for drug prescription,<br />
which should facilitate antibiotic prescription rules management<br />
and publication of guidelines in largehealth care<br />
institutions and public health administrations.<br />
Acknowledgements<br />
This experiment has been supported by the EU-IST-FP7<br />
DebugIT project #712139. Development of the EAGLi<br />
question-answering framework was supported by SNF<br />
Grant #325230-120758.<br />
References<br />
1 Mora Y, Avila-Agüero ML, Umaña MA, Jiménez AL, París MM,<br />
Faingezicht I.Epidemiological observations of the judicious use of antibiotics<br />
in apediatric teaching hospital. Int JInfect Dis. 2002;6:74–7.<br />
2 Iosifidis E, Antachopoulos C, Tsivitanidou M, Katragkou A,Farmaki E,<br />
Tsiakou M, et al.Differential correlationbetween rates of antimicrobial<br />
PROCEEDINGS ANNUAL MEETING 2009<br />
drug consumption and prevalence of antimicrobial resistance in atertiary<br />
care hospital in Greece. Infect Control Hosp Epidemiol. 2008;<br />
39:615–22.<br />
3 Gould IM. The epidemiology of antibiotic resistance. Int JAntimicrob<br />
Agents. 2008;32(Suppl 1):S2–9.<br />
4 Lovis C, Colaert D,Stroetmann VN. DebugIT for patient safety –improving<br />
the treatment with antibiotics through multimediadata mining<br />
of heterogeneous clinical data. Stud Health Technol Inform. 2008;136:<br />
641–6.<br />
5 PerryCA. Knowledge bases in medicine: areview.Bull Med Libr Assoc.<br />
1990;78:271–82.<br />
6 Pestotnik SL, Classen DC, Evans RS, Burke JP. Implementing antibiotic<br />
practice guidelines through computer-assisted decision support: clinical<br />
and financial outcomes. Ann Intern Med. 1996;124:884–90.<br />
7 Harvey K, Stewart R, Hemming M, Moulds R. Use of antibiotic agents<br />
in alargeteaching hospital. The impact of AntibioticGuidelines. Med J<br />
Aust. 1983;2:217–21.<br />
8 Baumgartner WA Jr, Cohen KB, Hunter L. An open-source framework<br />
for large-scale,flexible evaluation of biomedical text mining systems. J<br />
Biomed Discov Collab. 2008;29.<br />
9 Gobeill J, Ehrler F, Tbahriti I, Ruch P. Vocabulary-driven Passage Retrieval<br />
for Question-Answering in Genomics. TREC, National Institute<br />
of Standards and Technology, 2007.<br />
10 Ruch P, Gobeill J, Lovis C,Geissbühler A. Automatic medical encoding<br />
with SNOMED categories. BMC Med Inform Decis Mak 2008;8<br />
(Suppl 1):S6.<br />
11 Aronson AR, Demner-Fushman D, Humphrey SM,Lin J, Liu H, Ruch P,<br />
et al. Fusion of knowledge-intensive and statistical approaches for retrieving<br />
and annotating textual genomics documents, TREC, National<br />
Institute of Standards and Technology, 2005.<br />
12 Singhal A. Modern Information Retrieval: ABrief Overview. Bulletin of<br />
the IEEE Computer Society Technical Committee onData Engineering<br />
2001;24:35–43.<br />
13 Fox EA, Shaw JA. Combination of multiple searches. TREC, National<br />
Institute of Standards and Technology, 1994.<br />
14 Funk ME, Reid CA. Indexing consistency in MEDLINE. Bull Med Libr<br />
Assoc. 1983;71:176–83.<br />
<strong>Swiss</strong> <strong>Medical</strong> <strong>Informatics</strong> 2009; n o 67<br />
39