Nitrosopumilus maritimus genome reveals unique - de la Torre ...
Nitrosopumilus maritimus genome reveals unique - de la Torre ...
Nitrosopumilus maritimus genome reveals unique - de la Torre ...
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A.<br />
0.1<br />
B.<br />
100<br />
90<br />
52<br />
Other Supporting Information Files<br />
Table S1 (DOC)<br />
Table S2 (DOC)<br />
Table S3 (DOC)<br />
Table S4 (DOC)<br />
Table S5 (DOC)<br />
Table S6 (DOC)<br />
96<br />
100<br />
97<br />
78<br />
100<br />
100<br />
38<br />
100<br />
55<br />
95<br />
100<br />
61<br />
88<br />
64<br />
70<br />
100<br />
100<br />
100<br />
100<br />
100<br />
100<br />
100<br />
97<br />
51<br />
86<br />
100<br />
61<br />
100<br />
100<br />
100<br />
100<br />
90<br />
100<br />
100<br />
Giardia <strong>la</strong>mblia<br />
Entamoeba histolytica<br />
Leishmania major<br />
Cenarchaeum symbiosum<br />
Candidatus <strong>Nitrosopumilus</strong> <strong>maritimus</strong><br />
Candidatus Korarchaeum cryptofilum<br />
Thermofilum pen<strong>de</strong>ns<br />
Caldivirga maquilingensis<br />
100<br />
94<br />
100<br />
Pyrobaculum calidifontis<br />
Pyrobaculum is<strong>la</strong>ndicum<br />
Pyrobaculum aerophilum<br />
Pyrobaculum arsenaticum<br />
Ignicoccus hospitalis<br />
Staphylothermus marinus<br />
Aeropyrum pernix<br />
Hyperthermus butylicus<br />
Metallosphaera sedu<strong>la</strong><br />
Sulfolobus solfataricus<br />
Thermococcus gammatolerans<br />
Thermococcus kodakarensis<br />
Pyrococcus furiosus<br />
Pyrococcus abyssi<br />
Pyrococcus horikoshii<br />
Methanopyrus kandleri<br />
100<br />
100<br />
100<br />
100<br />
100<br />
100<br />
100<br />
Trypanosoma cruzi<br />
Trypanosoma brucei<br />
Cryptosporidium parvum<br />
Theileria parva<br />
P<strong>la</strong>smodium yoelii<br />
P<strong>la</strong>smodium falciparum<br />
Arabidopsis thaliana<br />
Oryza sativa<br />
Dictyostelium discoi<strong>de</strong>um<br />
Homo sapiens<br />
Anopheles gambiae<br />
Saccharomyces cerevisiae<br />
Schizosaccharomyces pombe<br />
Sulfolobus acidocaldarius<br />
Sulfolobus tokodaii<br />
Nanoarchaeum equitans<br />
Methanosphaera stadtmanae<br />
Methanothermobacter thermautotrophicus<br />
Methanocaldococcus jannaschii<br />
Methanococcus aeolicus<br />
100<br />
100<br />
Methanococcus maripaludis<br />
Methanococcus vannielii<br />
Picrophilus torridus<br />
Ferrop<strong>la</strong>sma acidarmanus<br />
Thermop<strong>la</strong>sma acidophilum<br />
Thermop<strong>la</strong>sma volcanium<br />
100<br />
100<br />
100<br />
Archaeoglobus fulgidus<br />
69<br />
Halobacterium sp<br />
Natronomonas pharaonis<br />
71<br />
Haloarcu<strong>la</strong> marismortui<br />
100<br />
Halorubrum <strong>la</strong>cusprofundi<br />
100<br />
Haloquadratum walsbyi<br />
100 Haloferax volcanii<br />
Methanocorpusculum <strong>la</strong>breanum<br />
100<br />
Methanoculleus marisnigri<br />
75<br />
Candidatus Methanoregu<strong>la</strong><br />
82<br />
Methanospirillum hungatei<br />
Methanosaeta thermophi<strong>la</strong><br />
Methanococcoi<strong>de</strong>s burtonii<br />
100<br />
Methanosarcina barkeri<br />
100 Methanosarcina acetivorans<br />
100 Methanosarcina mazei<br />
1.00<br />
Saccharomyces cerevisiae<br />
Dictyostelium discoi<strong>de</strong>um<br />
Oryza sativa<br />
Candidatus Korarchaeum cryptofilum<br />
Candidatus <strong>Nitrosopumilus</strong> <strong>maritimus</strong><br />
1.00<br />
Cenarchaeum symbiosum<br />
0.88<br />
Pyrobaculum aerophilum<br />
1.00<br />
1.00<br />
Thermofilum pen<strong>de</strong>ns<br />
1.00 1.00<br />
Aeropyrum pernix<br />
Hyperthermus butylicus<br />
0.88<br />
1.00<br />
1.00<br />
Sulfolobus acidocaldarius<br />
Metallosphaera sedu<strong>la</strong><br />
Nanoarchaeum equitans<br />
Thermococcus kodakarensis<br />
1.00<br />
1.00 Pyrococcus abyssi<br />
Methanopyrus kandleri<br />
1.00<br />
1.00<br />
Methanothermobacter thermautotrophicus<br />
1.00<br />
Methanosphaera stadtmanae<br />
1.00<br />
1.00<br />
Methanocaldococcus jannaschii<br />
Methanococcus maripaludis<br />
Thermop<strong>la</strong>sma volcanium<br />
1.00<br />
1.00<br />
Ferrop<strong>la</strong>sma acidarmanus<br />
1.00<br />
Archaeoglobus fulgidus<br />
Haloarcu<strong>la</strong> marismortui<br />
1.00<br />
1.00<br />
Natronomonas pharaonis<br />
1.00 1.00<br />
Methanosarcina mazei<br />
Methanosaeta thermophi<strong>la</strong><br />
0.70<br />
Methanospirillum hungatei<br />
0.1<br />
1.00<br />
Methanocorpusculum <strong>la</strong>breanum<br />
Eucarya<br />
Thaumarchaeota<br />
Korarchaeota<br />
Thermoproteales<br />
Desulfurococcales<br />
Sulfolobales<br />
Nanoarchaeota<br />
Thermococcales<br />
Methanopyrales<br />
Methanobacteriales<br />
Eucarya<br />
Methanococcales<br />
Thermop<strong>la</strong>smatales<br />
Archaeoglobales<br />
Halobacteriales<br />
Methanomicrobiales<br />
Methanosarcinales<br />
Korarchaeota<br />
Thaumarchaeota<br />
Thermoproteales<br />
Desulfurococcales<br />
Sulfolobales<br />
Nanoarchaeota<br />
Thermococcales<br />
Methanopyrales<br />
Methanobacteriales<br />
Methanococcales<br />
Thermop<strong>la</strong>smatales<br />
Archaeoglobales<br />
Halobacteriales<br />
Methanosarcinales<br />
Methanomicrobiales<br />
Fig. S4. (A) Maximum-likelihoodphylogenyofGroup1Archaea. The phylogeny was inferred using an alignment of concatenated R-proteins (66 taxa, 6,142<br />
positions). WAG+Inv+Gamma (4 c<strong>la</strong>sses); 100 replicates. (B) BayesiantreeofmesophilicGroup1Archaea inferred using an alignment of concatenated Rproteins<br />
(29 taxa, 6,142 positions). Mixed mo<strong>de</strong>l + Gamma (4 c<strong>la</strong>sses); 100 replicates.<br />
Walker et al. www.pnas.org/cgi/content/short/0913533107 5of5<br />
Crenarchaeota Euryarchaeota<br />
Crenarchaeota Euryarchaeota
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