Nitrosopumilus maritimus genome reveals unique - de la Torre ...

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Nmar1121 4B7 f 1,025,889 1,026,476 Ferritin Dps family protein Nmar1182 4B7 f 1,080,792 1,082,114 DEAD/DEAH box helicase domain protein Nmar1183 4B7 r 985,476 985,778 Putative uncharacterized protein Nmar1185 4B7 r 986,566 989,808 Carbamyl phosphate synthetase Nmar1186 4B7 r 989,810 990,964 Carbamoylphosphate synthase, small subunit Nmar1189 4B7 f 1,085,567 1,085,911 hypothetical protein Nmar1190 4B7 f 1,086,156 1,086,416 hypothetical protein Nmar1191 4B7 r 1,088,440 1,086,413 protein of unknown function DUF255 Nmar1275 4B7 r 1,170,906 1,170,133 Rhodanese domain protein Nmar1310 54d9 r 1,199,427 1,198,744 glutamine amidotransferase class-I Nmar1352 DeepAntEC39 r 1,238,660 1,237,860 regulatory protein ArsR Nmar1357 4B7 f 1,243,214 1,243,858 nitroreductase Nmar1455 54d9 f 1,323,582 1,324,943 Adenylosucinnate lyase Nmar1466 54d9 r 1,333,685 1,334,440 Asparagine synthase (glutaminehydrolyzing) Nmar1469 54d9 f 1,335,702 1,336,520 hypothetical protein Nmar1477 54d9 r 1,345,206 1,347,521 Valyl-tRNA synthetase Nmar1500 54d9 r 1,367,890 1,367,240 hypothetical protein: putative archaeal ammonia monoxygenase subunit A Nmar1501 54d9 r 1,368,387 1,368,025 hypothetical protein Nmar1503 54d9 f 1,369,326 1,369,895 hypothetical protein: putative archaeal ammonia monoxygenase subunit B Nmar1524 DeepAntEC39 r 1,385,659 1,385,420 regulatory protein AsnC/Lrp family Nmar1622 54d9 r 1,478,462 1,477,386 Alcohol dehydrogenase zinc-binding domain protein Nmar1649 54d9 f 1,507,916 1,508,743 hypothetical protein Nmar1667 54d9 r 1,526,542 1,525,130 hypothetical protein Nmar1685 4B7 r 1,545,979 1,545,383 hypothetical protein SARGASSO SEA CONTIGS ORF Accession number Strand Left bp Right bp Annotation of top BLAST hit Nmar0037 EQ086597 f 28,946 29,659 Organic radical activating enzyme Nmar0083 EQ085329 r 70,282 71,367 Cobalt-precorrin-6A synthase Nmar0084 EQ085329 f 71,458 72,327 Nucleoside-diphosphate-sugar epimerase Nmar0085 EQ085329 r 72,304 73,470 S-adenosylmethionine synthetase Nmar0087 EQ085329 f 73,840 74,493 RecA/RadA recombinase related protein Nmar0088 EQ085329 f 74,592 77,333 Lhr-like helicase Single-stranded DNA-binding Nmar0089 EQ085329 r 77,330 78,730 replication protein A, large (70 kD) subunit Nmar0090 EQ085329 f 78,944 79,882 ABC-type multidrug transport system, ATPase component Nmar0091 EQ085329 f 79,866 80,627 ABC-type multidrug transport system, permease component Nmar0093 EQ085329 r 81,548 82,600 Uncharacterized conserved archaeal protein Nmar0094 EQ085329 f 82,664 83,803 Putative uncharacterized protein Nmar0095 EQ085329 f 83,839 84,402 Molecular chaperone GrpE Nmar0096 EQ085329 f 84,405 86,315 Molecular chaperone Nmar0097 EQ085329 f 86,365 87,450 DnaJ-class molecular chaperone Nmar0099 EQ085329 r 88,308 90,212 Archaeal Glu-tRNA Gln amidotransferase subunit E Nmar0100 EQ085329 r 90,221 91,510 Archaeal Glu-tRNA Gln amidotransferase subunit D/asparaginase
Nmar0101 EQ085329 r 91,543 93,711 AAA ATPase Nmar0102 EQ085329 f 93,816 94,550 Ribosomal protein L2 Nmar0104 EQ085329 r 94,876 95,208 Nmar0105 EQ085329 r 95,588 96,502 ATPase of the PP-loop superfamily Nmar0107 EQ085329 r 97,656 98,852 Membrane-associated Zn-dependent protease Nmar0108 EQ085329 f 98,896 99,207 Uncharacterized protein involved in tolerance to divalent cations Nmar0168 EQ086682 f 155,950 156,876 Hypothetical UDP-glucose 4-epimerase Nmar0173 EQ084738 r 160,619 161,266 Short-chain alcohol dehydrogenase Nmar0198 EQ086546 r 178,988 179,500 Putative uncharacterized protein Nmar0231 EQ086498, EQ085222 r 203,816 205,486 Putative uncharacterized protein Nmar0269 EQ085249 f 236,951 238,072 Putative uncharacterized protein Nmar0270 EQ085249 f 238,081 239,238 Replicatin factor C/ATPase involved in DNA replication Nmar0271 EQ085249 f 239,256 239,546 Putative uncharacterized protein Nmar0272 EQ085249 f 239,653 241,200 Acetyl-CoA carboxylase, alpha and beta subunits Nmar0273 EQ085249 f 241,206 242,693 Biotin carboxylase Nmar0274 EQ085249 f 242,700 243,212 Acetyl/proprionyl-CoA carboxylase, alpha subunit Nmar0275 EQ085249 r 243,229 243,693 Peroxiredoxin Nmar0276 EQ085249 f 243,850 244,182 NADH-ubiquinone oxidoreductase, subunit A Nmar0277 EQ085249 f 244,223 244,747 NADH-ubiquinone oxidoreductase, subunit B Nmar0278 EQ085249 f 24,474 245,349 NADH-ubiquinone oxidoreductase, subunit C Nmar0279 EQ085249 f 245,352 246,488 NADH-ubiquinone oxidoreductase, subunit D Nmar0280 EQ085249 f 246,489 247,787 NADH-ubiquinone oxidoreductase, subunit H Nmar0281 EQ085249 f 247,787 248,284 NADH-ubiquinone oxidoreductase, subunit I Nmar0282 EQ085249 f 248,277 248,789 NADH-ubiquinone oxidoreductase, subunit J Nmar0283 EQ085249 f 248,770 249,075 NADH-ubiquinone oxidoreductase, subunit 4L Nmar0284 EQ085249 f 249,075 250,628 Formate hydrogenlyase, subunit 3/multisubunit Na/H antiporter Nmar0285 EQ085249 f 250,630 252,708 NADH-ubiquinone oxidoreductase, subunit L Nmar0286 EQ085249 f 252,721 254,205 NADH-ubiquinone oxidoreductase, subunit N Nmar0287 EQ085249 r 254,195 255,046 Geranylgeranyl pyrophosphate synthase/geranyltransferase Nmar0289 EQ085222 r 256,122 256,727 Orotate phosphoribosyltransferase Nmar0290 EQ085222 f 256,778 257,860 Putative uncharacterized protein Nmar0291 EQ085222 r 257,852 258,958 Membrane-associated Zn-dependent protease Nmar0292 EQ085222 f 259,014 259,529 Acetyltransferase Nmar0294 EQ085222 r 259,787 260,614 Methyltransferasae Nmar0295 EQ085222 r 260,620 262,407 ATPase, Rnase L inhibitor Nmar0352 EQ085222 f 319,896 320,219 Ribosomal protein L30E Nmar0353 EQ085222 f 320,271 320,735 Transcription elogation factor Nmar0354 EQ085222 f 320,739 321,176 30S ribosomal protein S12P Nmar0355 EQ085222 f 321,179 321,778 Ribosomal protein S7
Page 1 and 2: Nitrosopumilus maritimus genome rev
Page 3 and 4: ammonia oxidation. There are two hy
Page 5 and 6: Fig. 3. Comparison of N. maritimus
Page 7 and 8: Supporting Information Walker et al
Page 9 and 10: Fig. S2. Archaeal ammonia monooxyge
Page 11 and 12: A. 0.1 B. 100 90 52 Other Supportin
Page 13 and 14: Supplemental Table 2: Predicted coo
Page 15 and 16: Supplemental Table 3: Gene predicti
Page 17 and 18: Nmar_tR26 1,630,610 1,630,537 ProGG
Page 19 and 20: Supplemental Table 4: Gene predicti
Page 21 and 22: Nmar_0258 CENSYa_1705 82 227,624 22
Page 29 and 30: Nmar_1303 CENSYa_0131 86 1,193,261
Page 35 and 36: Molybdopterin-guanine dinucleotide
Page 37: Nmar0935 DeepAntEC39 f 815,847 816,
Page 41 and 42: Nmar0436 EQ085799 f 386,930 387,319
Page 43 and 44: Nmar0982 EP710054 r 859,116 859,526
Page 45 and 46: Nmar1297 EQ086682 f 1,187,165 1,188

Nitrosopumilus maritimus genome reveals unique - de la Torre ...

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