Nitrosopumilus maritimus genome reveals unique - de la Torre ...

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Supplemental Table 5: Predicted distribution pattern of proteins diagnostic for major archaeal phyla. Protein COG N. maritimus C. symbiosium Euryarchaeota Crenaracheota Cell division protein FtsZ COG0206 YP_001582596 YP_875876 + - Predicted ATP-dependent protease COG1067 - - + - ERCC4-type nuclease COG1111 YP_001582278 YP_876110 + - MiaB family, Radical SAM enzyme COG1244 - - + - Archaeal DNA polymerase D, small subunit COG1311 YP_001581340 YP_876754 + - Archaeal DNA polymerase D, large subunit COG1933 YP_001583128 YP_876741 + - Predicted membrane protein COG1422 YP_001581738 YP_875263 + - Uncharacterised MobA-related protein COG1873 -/? 1 -/? 1 + - Uncharacterised conserved protein COG2450 YP_001583060 YP_876421 + - Predicted membrane protein COG4243 - - - + ribosomal protein L13E COG4352 - - - + Uncharacterised protein conserved in archaea COG4755 - - - + Uncharacterised conserved protein COG4353 - - - + Uncharacterised protein conserved in archaea COG4879 - - - + Predicted aminopeptidase, Iap family COG4882 - - - + Uncharacterized Zn ribbon-containing protein COG4888 - - - + Predicted metallopeptidase COG4900 - - - + Ribosomal protein S25 COG4901 -/? (YP_001582264) -/? (YP_875201) - + Predicted nucleotidyltransferase COG4914 - - - + Ribosomal protein S30 COG4919 YP_001582721 YP_875487 - + Predicted membrane protein COG4920 - - - + Uncharacterised protein conserved in archaea COG5399 - - - + Uncharacterized conserved protein containing a coiled-coil COG5493 - - - + Predicted thioredoxin/glutaredoxin COG5494 - - - + EMAP domain RNA-binding protein COG0073 YP_001581931 - + + Phosphoribosylanthranilate isomerase COG0135 - - + + Molybdopterin biosynthesis enzyme COG0303 - - + + Hydrogenase maturation factor COG0309 - - + + Molybdenum cofactor biosynthesis enzyme COG0315 - - + + Dihydrodipicolinate synthase/Nacetylneuraminate lyase COG0329 - - + + Membrane protease subunit, stomatin/prohibitin homolog COG0330 -:? - + + NAD(FAD)-dependent dehydrogenase COG0446 -/? - + + Molybdopterin biosynthesis enzyme COG0521 - - + + Topoisomerase IA COG0550 - - + + CDP-diglyceride synthetase COG0575 - - + + Methionine synthase II (cobalaminindependent) COG0620 - - + + Deoxycytidine deaminase COG0717 - - + + ABC-type molybdate transport system, periplasmic component COG0725 - - + + Molybdopterin-guanine dinucleotide biosynthesis protein A COG0746 - - + + Predicted transcriptional regulator COG1395 - - + + NMD protein affecting ribosome stability and mRNA decay COG1499 - - + +
Molybdopterin-guanine dinucleotide biosynthesis protein COG1763 - - + + Archaeal S-adenosylmethionine synthetase COG1812 - - + + Predicted transcription factor, homolog of eukaryotic MBF1 COG1813 - - + + Transcriptional regulators COG1846 - - + + Zn-dependent protease COG1994 - - + + Ribosomal protein S24E COG2004 - - + + Zn-dependent hydrolase of the betalactamase fold COG2220 - - + + Molybdenum cofactor biosynthesis enzyme COG2896 - - + + 1 - Proteins present in N. maritmius and C. symbiosum showing similarity with the euryarchaeal protein. ? - Proteins present in N. maritimus or/and C. symbiosium but (i) showing a weak similarity or (ii) sharing only a domain with euryarchaeal or crenarchaeal proteins
Page 1 and 2: Nitrosopumilus maritimus genome rev
Page 3 and 4: ammonia oxidation. There are two hy
Page 5 and 6: Fig. 3. Comparison of N. maritimus
Page 7 and 8: Supporting Information Walker et al
Page 9 and 10: Fig. S2. Archaeal ammonia monooxyge
Page 11 and 12: A. 0.1 B. 100 90 52 Other Supportin
Page 13 and 14: Supplemental Table 2: Predicted coo
Page 15 and 16: Supplemental Table 3: Gene predicti
Page 17 and 18: Nmar_tR26 1,630,610 1,630,537 ProGG
Page 19 and 20: Supplemental Table 4: Gene predicti
Page 21 and 22: Nmar_0258 CENSYa_1705 82 227,624 22
Page 29 and 30: Nmar_1303 CENSYa_0131 86 1,193,261
Page 31 and 32: Nmar_1564 CENSYa_2017 44 1,432,780
Page 33: Nmar_1783 CENSYa_1861 52 1,629,775
Page 37 and 38: Nmar0935 DeepAntEC39 f 815,847 816,
Page 39 and 40: Nmar0101 EQ085329 r 91,543 93,711 A
Page 41 and 42: Nmar0436 EQ085799 f 386,930 387,319
Page 43 and 44: Nmar0982 EP710054 r 859,116 859,526
Page 45 and 46: Nmar1297 EQ086682 f 1,187,165 1,188

Nitrosopumilus maritimus genome reveals unique - de la Torre ...

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