Nitrosopumilus maritimus genome reveals unique - de la Torre ...

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Nmar0356 EQ085222 r 321,937 322,266 Nmar0357 EQ085222 f 322,289 322,993 Putative uncharacterized protein Nmar0359 EQ085222 r 323,446 324,444 Dehydrogenase Nmar0367 EQ085222, EP918968 r 330,772 333,639 Leucyl-tRNA snthetase Nmar0368 EQ085222, EP918968 r 333,646 336,315 Alanyl-tRNA synthetase Nmar0373 EQ085222 f 340,670 341,179 Putative uncharacterized protein Nmar0374 EQ085222, EP918968 f 341,230 341,547 Ribosomal protein L12E/L44/L45/RPP1/RPP2 Nmar0375 EP918968 f 341,630 342,262 Putative uncharacterized protein Nmar0381 EP918968 r 345,558 346,424 Ribosomal protein L10 Nmar0382 EQ085222 r 346,417 347,079 Ribosomal protein L1 Nmar0383 EQ085222 f 347,271 347,708 Tranascriptional reglator Nmar0385 EQ085222, EP918968 r 348,548 349,027 Ribosomal protein L11 Nmar0386 EQ085222, EP918968 r 349,062 349,520 Ribosomal prrotein L24A Nmar0387 EQ085222, EP918968 f 349,736 350,512 Uncharacterized conserved archaeal protein Nmar0388 EQ085222, EP918968 f 350,509 350,808 Methylated DNA-protein cysteine methyltransferase Nmar0390 EQ085222, EP918968 r 351,250 351,705 Ribosomal protein L19E Nmar0391 EQ085222, EP918968 r 351,689 352,093 Ribosomal protein L32E Nmar0392 EQ085222, EP918968 f 352,349 353,848 Phosphoenolpyruvate carboxykinase (ATP) Nmar0393 EQ085222 r 353,850 355,832 Vpr Nmar0394 EQ085222 f 355,951 356,571 Superoxide dismutase Nmar0395 EQ085222 f 356,654 357,091 Prefoldin, molecular chaperone Nmar0396 EQ085222 f 357,095 358,636 Signal recognition particle GTPase Nmar0409 EQ086635 r 367,332 368,645 Dehydrogenase Nmar0410 EQ086635 f 368,734 369,015 Putative uncharacterized protein Nmar0412 EQ086635 r 369,607 370,575 Lactate dehydrogenase Nmar0413 EQ086635 f 370,822 372,732 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit Nmar0414 EQ086635 f 372,722 373,684 2-oxoglutarate ferredoxin oxidoreductase, beta subunit Nmar0415 EQ086635 f 373,734 374,174 Putative uncharacterized protein Nmar0416 EQ086635 r 374,167 374,700 Putative uncharacterized protein Nmar0418 EQ086635 r 375,131 375,700 Putative uncharacterized protein Nmar0419 EQ085799 r 375,731 376,510 Putative uncharacterized protein Nmar0420 EQ085799 f 376,584 377,852 3-isopropylmalate dehydratase, large subunit Nmar0421 EQ085799 f 377,852 378,334 3-isopropylmalate dehydratase, small subunit Nmar0422 EQ085799 f 378,343 379,758 3-isopropylmalate dehydratase, large subunit Nmar0423 EQ085799 f 379,760 380,344 3-isopropylmalate dehydratase, small subunit Nmar0425 EQ085799 r 381,045 381,494 30S ribosomal protein S9P Nmar0426 EQ085799 r 381,491 381,955 Ribosomal protein L13 Nmar0427 EQ085799 r 381,948 382,295 Ribosomal protein L18E Nmar0428 EQ085799 r 382,339 383,004 DNA-directed RNA polymerase, alpha subunit Nmar0430 EQ085799 f 383,542 384,228 Exosome complex subunit Nmar0431 EQ085799 f 384,228 384,908 Exosome complex RNA-binding protein Nmar0432 EQ085799 f 384,908 385,642 Rnase PH Nmar0433 EQ085799 f 385,645 386,463 Rnase PH-related exoribonuclease Nmar0435 EQ085799 f 386,661 386,906
Nmar0436 EQ085799 f 386,930 387,319 Prefolding, chaperonin cofactor Nmar0437 EQ085799 f 387,372 388,058 Helicase-associated endonuclease for fork-structured DNA Nmar0439 EQ085799 r 388,545 389,024 Nucleic acid-binding protein Nmar0440 EQ085799 r 389,014 389,850 Inorganic polyphosphate/ATP-NAD kinase Nmar0443 EQ085799 f 391,108 392,055 Ferredoxin Nmar0444 EQ085799 f 392,111 394,177 Glycosyltransferase Nmar0445 EQ085799 r 394,174 395,703 Methyl-accepting chemotaxis protein Nmar0446 EQ085799 f 396,135 397,460 Kef-type K transport system, membrane component Nmar0447 EQ085799 f 397,453 397,881 Putative uncharacterized protein Nmar0520 EQ085799 r 464,980 465,363 Ribosomal protien S8E Nmar0521 EQ085799 r 465,432 466,010 Transcriptional regulator containing HTH domain Nmar0523 EQ085799 f 466,837 467,889 Zn-dependent alcohol dehydrogenase Nmar0526 EQ086555 f 469,360 469,671 Translation initiation factor 1 Nmar0528 EQ085799 f 470,238 470,846 Putative uncharacterized protein Nmar0529 EQ085799 f 470,881 471,291 Translational elongation factor P (EF- P)/translation initiation factor 5A Nmar0530 EQ085799 f 471,402 472,091 ATPase of the PP-loop superfamily Nmar0531 EQ085799 f 472,084 473,412 Signal recognition particle GTPase Nmar0532 EQ086635 f 473,435 474,580 Pseudouridylate synthase Nmar0533 EQ086635 f 474,754 475,464 Putative uncharacterized protein Nmar0535 EQ086635 r 475,650 476,093 Putative uncharacterized protein Nmar0536 EQ086635 f 476,150 476,710 Putative uncharacterized protein Nmar0537 EQ086635 r 476,694 477,980 Phosphoglycerate mutase Nmar0538 EQ086635 f 478,209 479,225 Galactose-1-phosphate uridylyltransferase Nmar0539 EQ086635 f 479,268 479,714 Putative uncharacterized protein Nmar0562 EQ086635 f 503,038 503,463 Nmar0578 EQ085355 r 513,299 514,888 Lysyl-tRNA synthetase Nmar0579 EQ085355 r 514,892 516,475 Histone acetyltransferase Nmar0581 EQ085355 r 516,887 518,137 Kef-type K transport system, membrane component Nmar0582 EQ085355 r 518,212 519,234 Phosphoribosylformylglycinamidine cyclo-ligase Nmar0583 EQ085355 r 519,284 520,009 Putative uncharacterized protein Nmar0585 EQ085355 r 522,090 522,437 Nmar0590 EQ085355 f 525,903 526,793 Ca2/Na antiporter Nmar0592 EQ085355, EQ086504 r 528,167 529,426 Thiamine biosynthesis enzyme Nmar0593 EQ086504 r 529,423 530,595 Thiamine biosynthesis enzyme Nmar0594 EQ086504 r 530,634 531,773 Trypsin-like serine protease Nmar0595 EQ086504 r 531,812 533,020 Glycosyltransferase involved in cell wall biogenesis Nmar0596 EQ086504 r 533,024 533,440 Putative uncharacterized protein Nmar0597 EQ086504 f 533,768 534,178 Methionyl-tRNA synthetase Nmar0598 EQ086504 r 534,324 534,884 TATA-box binding protein (TBP), compoenent of TFIID and TFIIIB Nmar0599 EQ086504 f 535,023 536,144 Uncharacterized conserved archaeal protein Nmar0601 EQ086504 r 536,325 537,218 Methionine aminopeptidase Nmar0602 EQ086504 f 537,506 537,751 Zn-ribbon protein Nmar0616 EQ086504 f 554,316 557,606 Putative uncharacterized protein Nmar0627 EQ086546 f 567,675 569,051 Putative uncharacterized protein
Page 1 and 2: Nitrosopumilus maritimus genome rev
Page 3 and 4: ammonia oxidation. There are two hy
Page 5 and 6: Fig. 3. Comparison of N. maritimus
Page 7 and 8: Supporting Information Walker et al
Page 9 and 10: Fig. S2. Archaeal ammonia monooxyge
Page 11 and 12: A. 0.1 B. 100 90 52 Other Supportin
Page 13 and 14: Supplemental Table 2: Predicted coo
Page 15 and 16: Supplemental Table 3: Gene predicti
Page 17 and 18: Nmar_tR26 1,630,610 1,630,537 ProGG
Page 19 and 20: Supplemental Table 4: Gene predicti
Page 21 and 22: Nmar_0258 CENSYa_1705 82 227,624 22
Page 29 and 30: Nmar_1303 CENSYa_0131 86 1,193,261
Page 35 and 36: Molybdopterin-guanine dinucleotide
Page 37 and 38: Nmar0935 DeepAntEC39 f 815,847 816,
Page 39: Nmar0101 EQ085329 r 91,543 93,711 A
Page 43 and 44: Nmar0982 EP710054 r 859,116 859,526
Page 45 and 46: Nmar1297 EQ086682 f 1,187,165 1,188

Nitrosopumilus maritimus genome reveals unique - de la Torre ...

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