Data integration in microbial genomics ... - Jacobs University

110 BIBLIOGRAPHY
pathways in marine bacteria revealed by functional screening and
metagenomic analyses. Environ Microbiol, 12(1):222–238.
[Martiny et al., 2006] Martiny, J. B. H., Bohannan, B. J. M., Brown,
J. H., Colwell, R. K., Fuhrman, J. A., Green, J. L., Horner-Devine,
M. C., Kane, M., Krumins, J. A., Kuske, C. R., Morin, P. J., Naeem,
S., Ovreås, L., Reysenbach, A.-L., Smith, V. H., and Staley, J. T.
(2006). Microbial biogeography: putting microorganisms on the
map. Nat Rev Microbiol, 4(2):102–112.
[Matthew B. Jones, 2006] Matthew B. Jones, Mark P. Schildhauer, O.
R. S. B. (2006). The new bioinformatics: Integrating ecological data
from the gene to the biosphere. Annual Reviews Ecol. Evol. Syst,
02/06/08:519 – 544.
[Meehan and Baas-Becking, 1927] Meehan, W. J. and Baas-Becking,
L. (1927). Iron organisms. Science, 66(1697):42.
[Meyer et al., 2003] Meyer, F., Goesmann, A., McHardy, A. C., Bartels,
D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp,
O., Giegerich, R., and Pühler, A. (2003). Gendb–an open source
genome annotation system for prokaryote genomes. Nucleic Acids
Res, 31(8):2187–2195.
[Meyer et al., 2008] Meyer, F., Paarmann, D., D’Souza, M., Olson, R.,
Glass, E. M., Kubal, M., Paczian, T., Rodriguez, A., Stevens, R.,
Wilke, A., Wilkening, J., and Edwards, R. A. (2008). The metagenomics
rast server - a public resource for the automatic phylogenetic
and functional analysis of metagenomes. BMC Bioinformatics,
9:386.
[Minz et al., 1999] Minz, D., Flax, J. L., Green, S. J., Muyzer, G.,
Cohen, Y., Wagner, M., Rittmann, B. E., and Stahl, D. A. (1999).
Diversity of sulfate-reducing bacteria in oxic and anoxic regions of a
microbial mat characterized by comparative analysis of dissimilatory
sulfite reductase genes. Appl Environ Microbiol, 65(10):4666–4671.
[Moxon and Higgins, 1997] Moxon, E. R. and Higgins, C. F. (1997). E.
coli genome sequence. a blueprint for life. Nature, 389(6647):120–
121.