Data integration in microbial genomics ... - Jacobs University
Data integration in microbial genomics ... - Jacobs University
Data integration in microbial genomics ... - Jacobs University
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3.4. Design and Implementation 53<br />
Figure 3.5: <strong>Data</strong> model. The central Java class is the CDElement class, which is a composition<br />
of of the classes “report type” and “environmental package”. These classes implement<br />
the MIGS, MIMS and MIMARKS (MIxS) checklists specified by the GSC. The two str<strong>in</strong>gs<br />
“firstSequenceID” and “lastSequenceID” def<strong>in</strong>e if the CDElement conta<strong>in</strong>s CD for a s<strong>in</strong>gle or<br />
a range of sequences. Instances of the CDFastaHeader class conta<strong>in</strong> the data that is generated<br />
<strong>in</strong>to the FASTA headers <strong>in</strong> the FASTA file.