Package 'WGCNA' - Laboratory Web Sites - UCLA
Package 'WGCNA' - Laboratory Web Sites - UCLA
Package 'WGCNA' - Laboratory Web Sites - UCLA
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36 cutreeStatic<br />
cutreeStaticColor<br />
Constant height tree cut using color labels<br />
Description<br />
Cluster detection by a constant height cut of a hierarchical clustering dendrogram.<br />
Usage<br />
cutreeStaticColor(dendro, cutHeight = 0.9, minSize = 50)<br />
Arguments<br />
dendro<br />
cutHeight<br />
minSize<br />
a hierarchical clustering dendrogram such as returned by hclust.<br />
height at which branches are to be cut.<br />
minimum number of object on a branch to be considered a cluster.<br />
Details<br />
Value<br />
This function performs a straightforward constant-height cut as implemented by cutree, then calculates<br />
the number of objects on each branch and only keeps branches that have at least minSize<br />
objects on them.<br />
A character vector giving color labels of objects, with "grey" meaning unassigned. The largest<br />
cluster is conventionally labeled "turquoise", next "blue" etc. Run standardColors() to see<br />
the sequence of standard color labels.<br />
Author(s)<br />
See Also<br />
Peter Langfelder<br />
hclust for hierarchical clustering, cutree and cutreeStatic for other constant-height branch<br />
cuts, standardColors to see the sequence of color labels that can be assigned.<br />
cutreeStatic<br />
Constant-height tree cut<br />
Description<br />
Module detection in hierarchical dendrograms using a constant-height tree cut.<br />
whose size is at least minSize are retained.<br />
Only branches<br />
Usage<br />
cutreeStatic(dendro, cutHeight = 0.9, minSize = 50)
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