Package 'WGCNA' - Laboratory Web Sites - UCLA
Package 'WGCNA' - Laboratory Web Sites - UCLA
Package 'WGCNA' - Laboratory Web Sites - UCLA
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50 GTOMdist<br />
Arguments<br />
n<br />
gamma<br />
number of colors to be returned<br />
color correction power<br />
Details<br />
The function returns a color vector that starts with pure green, gradually turns into white and then<br />
to red. The power \gamma can be used to control the behaviour of the quarter- and three quartervalues<br />
(between green and white, and white and red, respectively). Higher powers will make the<br />
mid-colors more white, while lower powers will make the colors more saturated, respectively.<br />
Value<br />
A vector of colors of length n.<br />
Author(s)<br />
Peter Langfelder<br />
Examples<br />
par(mfrow = c(3, 1))<br />
displayColors(greenWhiteRed(50));<br />
displayColors(greenWhiteRed(50, 3));<br />
displayColors(greenWhiteRed(50, 0.5));<br />
GTOMdist<br />
Generalized Topological Overlap Measure<br />
Description<br />
Generalized Topological Overlap Measure, taking into account interactions of higher degree.<br />
Usage<br />
GTOMdist(adjMat, degree = 1)<br />
Arguments<br />
adjMat<br />
degree<br />
adjacency matrix. See details below.<br />
integer specifying the maximum degree to be calculated.<br />
Value<br />
Matrix of the same dimension as the input adjMat.<br />
Author(s)<br />
Steve Horvath and Andy Yip
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