Package 'WGCNA' - Laboratory Web Sites - UCLA
Package 'WGCNA' - Laboratory Web Sites - UCLA
Package 'WGCNA' - Laboratory Web Sites - UCLA
Create successful ePaper yourself
Turn your PDF publications into a flip-book with our unique Google optimized e-Paper software.
38 dynamicMergeCut<br />
See Also<br />
standardColors<br />
Examples<br />
displayColors(standardColors(10))<br />
dynamicMergeCut<br />
Threshold for module merging<br />
Description<br />
Calculate a suitable threshold for module merging based on the number of samples and a desired Z<br />
quantile.<br />
Usage<br />
dynamicMergeCut(n, mergeCor = 0.9, Zquantile = 2.35)<br />
Arguments<br />
n<br />
mergeCor<br />
Zquantile<br />
number of samples<br />
theoretical correlation threshold for module merging<br />
Z quantile for module merging<br />
Details<br />
This function calculates the threshold for module merging. The threshold is calculated as the lower<br />
boundary of the interval around the theoretical correlation \mergeCor whose width is given by<br />
the Z value Zquantile.<br />
Value<br />
The correlation threshold for module merging; a single number.<br />
Author(s)<br />
Steve Horvath<br />
See Also<br />
moduleEigengenes, mergeCloseModules<br />
Examples<br />
dynamicMergeCut(20)<br />
dynamicMergeCut(50)<br />
dynamicMergeCut(100)
Change language