Comparative Genomics-Basic and Applied Research.pdf

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Contributors Leif Andersson Department of Medical Biochemistry and Microbiology Uppsala University Department of Animal Breeding and Genetics SwedishUniversityofAgricultural Sciences Uppsala, Sweden Rudi Appels Department of Agriculture and Food Western Australia SouthPerth,Australia Murdoch University and Molecular Plant Breeding Cooperative Research Centre Murdoch, Western Australia, Australia Michael R. Barnes Molecular Discovery Research Informatics GlaxoSmithKline Pharmaceuticals Harlow,Essex,UnitedKingdom Carolyn J. Brown University of British Columbia Vancouver, British Columbia, Canada James R. Brown Molecular Discovery Research Informatics GlaxoSmithKline Collegeville, Pennsylvania Lyle D. Burgoon Michigan State University Department of Biochemistry and Molecular Biology East Lansing, Michigan Timon P. H. Buys British Columbia Cancer Research Centre Vancouver, British Columbia Canada Jane M. Carlton Department of Medical Parasitology NewYorkUniversitySchool of Medicine New York, New York Raj Chari British Columbia Cancer Research Centre Vancouver, British Columbia Canada Bradley P. Coe British Columbia Cancer Research Centre Vancouver, British Columbia Canada Tal Dagan Institute of Botany University of Düsseldorf Düsseldorf, Germany Jonathan J. Davies British Columbia Cancer Research Centre University of British Columbia Vancouver, British Columbia Canada Koen Deforche Rega Institute Katholieke Universiteit Leuven Leuven, Belgium
Steven M. Foord Molecular Discovery Informatics GlaxoSmithKline Medicines Research Centre Stevenage, Hertfordshire United Kingdom Michael Francki Department of Agriculture andFoodWesternAustralia SouthPerth,Australia ValueAddedWheatCooperative Research Centre NorthRyde,NewSouthWales Australia Cathie Garnis British Columbia Cancer Research Centre Vancouver, British Columbia Canada Katrin Henze Institute of Botany University of Düsseldorf Düsseldorf, Germany Diarmaid Hughes Department of Cell and Molecular Biology Uppsala University Uppsala, Sweden Takeshi Kawashima Center for Integrative Genomics Department of Cell and Molecular Biology University of California at Berkeley Berkeley, California Jennifer Y. Kennett BritishColumbiaCancerResearch Centre Vancouver, British Columbia Canada Alice N. C. Kuo BritishColumbiaCancerResearch Centre University of British Columbia Vancouver, British Columbia Canada Joshua C. Kwekel Michigan State University Department of Biochemistry and Molecular Biology East Lansing, Michigan Wan L. Lam British Columbia Cancer Research Centre University of British Columbia Vancouver, British Columbia Canada Eric H. L. Lee British Columbia Cancer Research Centre University of British Columbia Vancouver, British Columbia Canada Elliot J. Lefkowitz Department of Microbiology UniversityofAlabamaatBirmingham Birmingham, Alabama Philippe Lemey Department of Zoology University of Oxford Oxford,UnitedKingdom Rega Institute Katholieke Universiteit Leuven Leuven, Belgium William W. Lockwood British Columbia Cancer Research Centre Vancouver, British Columbia Canada
Page 2 and 3: COMPARATIVE GENOMICS Basic and Appl
Page 4 and 5: Contents Preface ..................
Page 6: Chapter 18 Domestic Animals .......
Page 9 and 10: elationships among species is one o
Page 12: Editor Dr. James Brown iscurrentlya
Page 17 and 18: Emily Vucic British Columbia Cancer
Page 19 and 20: 2 Comparative Genomics The genome i
Page 21 and 22: 4 Comparative Genomics HGT is now r
Page 23 and 24: 6 Comparative Genomics to identify
Page 25 and 26: 8 Comparative Genomics 20. Smith, M
Page 28: Part I Basic Research in Comparativ
Page 31 and 32: 14 Comparative Genomics next-genera
Page 33 and 34: 16 Comparative Genomics A. B. E. (i
Page 35 and 36: 18 Comparative Genomics four colors
Page 37 and 38: 20 Comparative Genomics 2.4 CYCLIC
Page 39 and 40: B. Adapter Add unlabeled nucleotide
Page 41 and 42: 24 Comparative Genomics B. * 3 Natu
Page 43 and 44: 26 Comparative Genomics 17. Wu, W.
Page 45 and 46: 28 Comparative Genomics 64. Batters
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Page 49 and 50: 32 Comparative Genomics sequences,
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46 Comparative Genomics most parsim
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48 Comparative Genomics 29. D. Huso
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50 Comparative Genomics single-stra
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52 Comparative Genomics can nonethe
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54 Comparative Genomics 4.3 SO WHAT
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56 Comparative Genomics processivit
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FIGURE 4.2 (Continued). 58 Comparat
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60 Comparative Genomics virus genom
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62 Comparative Genomics virosphere
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64 Comparative Genomics These searc
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66 Comparative Genomics rapidly by
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68 Comparative Genomics is therefor
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70 Comparative Genomics 5. Needlema
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72 Comparative Genomics 47. Syed, A
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74 Comparative Genomics cake. This
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76 Comparative Genomics to begin wi
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78 Comparative Genomics became phag
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80 Comparative Genomics follows tha
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82 Comparative Genomics 5.8 CONCLUS
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84 Comparative Genomics 47. Ris, H.
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86 Comparative Genomics 94. Doolitt
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88 Comparative Genomics 6.1 INTRODU
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TABLE 6.1 Sequenced Genomes of Inve
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92 Comparative Genomics 6.2 CHARACT
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94 Comparative Genomics D. melanoga
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96 Comparative Genomics the sea urc
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98 Comparative Genomics genome info
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100 Comparative Genomics of the vol
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102 Comparative Genomics important
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104 Comparative Genomics 29. Dehal,
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106 Comparative Genomics 7.2 VERTEB
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108 Comparative Genomics 7.3 VERTEB
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TABLE 7.1 Vertebrate BAC Libraries
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112 Comparative Genomics TABLE 7.2
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114 Comparative Genomics in the mou
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116 Comparative Genomics organisms,
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118 Comparative Genomics and BAC li
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120 Comparative Genomics 42. Hirsch
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122 Comparative Genomics 87. Hedges
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124 Comparative Genomics 8.4.2.3 Us
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126 Comparative Genomics Thischapte
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128 Comparative Genomics versionsof
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132 Comparative Genomics famine,sev
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134 Comparative Genomics 8.4.2 APPR
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136 Comparative Genomics stability,
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138 Comparative Genomics core haplo
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140 Comparative Genomics whichinsom
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142 Comparative Genomics evidenceof
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146 Comparative Genomics Preliminar
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148 Comparative Genomics tests of s
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150 Comparative Genomics Instead,al
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152 Comparative Genomics 30. Tishko
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154 Comparative Genomics 77. Wang,
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9 Comparative Genomics in Drug Disc
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Comparative Genomics in Drug Discov
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p85i Ras BD C2 Helical Domain Catal
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178 Comparative Genomics 10.1 INTRO
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180 Comparative Genomics aim of pic
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182 Comparative Genomics access to
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184 Comparative Genomics this chapt
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186 Comparative Genomics during the
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188 Comparative Genomics 12. Hughes
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190 Comparative Genomics 57. Medini
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192 Comparative Genomics 98. Kwan,
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194 Comparative Genomics vaccine th
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196 Comparative Genomics mapping, a
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TABLE 11.1 Current Status of Parasi
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TABLE 11.1 Current Status of Parasi
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202 Comparative Genomics 11.3 THE C
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TABLE 11.2 Development Status of Va
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206 Comparative Genomics GAP (cytos
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208 Comparative Genomics experiment
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210 Comparative Genomics widely dif
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212 Comparative Genomics induced an
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214 Comparative Genomics foster col
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216 Comparative Genomics 49. Suroli
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218 Comparative Genomics 89. Bhatia
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220 Comparative Genomics on HIV com
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Lipid Bilayer SU TM A. B. HIV-1 PR
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224 Comparative Genomics assembled
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226 Comparative Genomics in hypermu
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228 Comparative Genomics roughly eq
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230 Comparative Genomics antibodies
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232 Comparative Genomics migration.
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234 Comparative Genomics This may e
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236 Comparative Genomics during tre
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238 Comparative Genomics PR33 L I F
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240 Comparative Genomics 18. Dalgle
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242 Comparative Genomics 64. Yusim,
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244 Comparative Genomics 107. Wensi
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246 Comparative Genomics A. Normal
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248 Comparative Genomics Database o
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250 Comparative Genomics alteration
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252 Comparative Genomics The applic
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254 Comparative Genomics A. Genomic
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256 Comparative Genomics 21. Wang,
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258 Comparative Genomics 66. Katoh,
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14 Comparative Cancer Epigenomics A
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Comparative Cancer Epigenomics 263
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Insulator Comparative Cancer Epigen
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282 Comparative Genomics Although t
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284 Comparative Genomics family rep
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286 Comparative Genomics Group 2 2
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288 Comparative Genomics in the Kre
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290 Comparative Genomics to Ensembl
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292 Comparative Genomics It is poss
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296 Comparative Genomics profiles w
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298 Comparative Genomics 30. Affyme
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300 Comparative Genomics including
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302 Comparative Genomics it is not
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304 Comparative Genomics high-to-lo
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306 Comparative Genomics assess sim
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308 Comparative Genomics array. Ana
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310 Comparative Genomics Genome Lev
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312 Comparative Genomics The RefSeq
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314 Comparative Genomics as GEO, NC
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316 Comparative Genomics putative t
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318 Comparative Genomics conserved
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320 Comparative Genomics 36. Curwen
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324 Comparative Genomics evolved fr
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326 Comparative Genomics 17.2.3 CER
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328 Comparative Genomics of the str
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330 Comparative Genomics 17.3.2 SIM
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332 Comparative Genomics basis for
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334 Comparative Genomics potential
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336 Comparative Genomics 31. Ma, L.
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338 Comparative Genomics 73. Salse,
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340 Comparative Genomics 116. Qi, L
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344 Comparative Genomics the causal
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346 Comparative Genomics a higher p
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348 Comparative Genomics feasible (
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350 Comparative Genomics 18.8.1 PLU
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352 Comparative Genomics Given the
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354 Comparative Genomics (allergens
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356 Comparative Genomics 2.0 1.8 1.
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358 Comparative Genomics has a majo
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360 Comparative Genomics 31. Brunbe
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362 Comparative Genomics 75. George
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364 Comparative Genomics APC, 253 A
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366 Comparative Genomics ChIP analy
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368 Comparative Genomics miRNA, 93
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370 Comparative Genomics Gene expre
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372 Comparative Genomics host inter
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374 Comparative Genomics Mammals co
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376 Comparative Genomics 3-OH group
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378 Comparative Genomics Protease i
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380 Comparative Genomics human geno
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382 Comparative Genomics V V224I, 3
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A. B. E. (iii) (ii) C. D. (i) COLOR
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C. T G C T A C G A T . . . 1 2 3 4
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-log(Q) 5.0 4.5 4.0 3.5 3.0 Selecti
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Cercopithecus aethiops GRI67AGM TAN
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