Comparative Genomics-Basic and Applied Research.pdf

26 Comparative Genomics
17. Wu, W. et al. Termination of DNA synthesis by N 6 -alkylated, not 3-O-alkylated,
photocleavable 2-deoxyadenosine triphosphates. Nucleic Acids Res. (in press).
18. Watson, J. D. & Crick, F. H. Molecular structure of nucleic acids; a structure for
dexoyribose nucleic acid. Nature 171, 737–738 (1953).
19. International Human Genome Sequencing Consortium. Finishing the euchromatic
sequence of the human genome. Nature 431, 931–945 (2004).
20. X PRIZE Foundation. X PRIZE Foundation announces largest medical prize in history.
http://genomics.xprize.org/newsevents/press_releases_2006–10–04_Archon_
X_PRIZE_for_Genomics.html (2006).
21. Regalado, A. Celebrity Genome Project? $10 million may speed decoding. Wall
Street Journal, October 4, 2006.
22. Levene, M. J. et al. Zero-mode waveguides for single-molecule analysis at high concentrations.
Science 299, 682–686 (2003).
23. Rhee, M. & Burns, M. A. Nanopore sequencing technology: research trends and
applications. Trends Biotechnol. 24, 580–586 (2006).
24. Yan, H. & Xu, B. Towards rapid DNA sequencing: detecting single-stranded DNA
with a solid-state nanopore. Small 2, 310–312 (2006).
25. Hyman, E. D. A new method of sequencing DNA. Anal. Biochem. 174, 423–436 (1988).
26. Ronaghi, M., Karamohamed, S., Pettersson, B., Uhlén, M. & Nyrén, P. Real-time
DNA sequencing using detection of pyrophosphate release. Anal. Biochem. 242,
84–89 (1996).
27. Leamon, J. H. et al. A massively parallel PicoTiterPlate based platform for discrete
picoliter-scale polymerase chain reactions. Electrophoresis 24, 3769–3777 (2003).
28. Margulies, M. et al. Genome sequencing in microfabricated high-density picolitre
reactors. Nature 437, 376–380 (2005).
29. Dressman, D., Yan, H., Traverso, G., Kinzler, K. W. & Vogelstein, B. Transforming
single DNA molecules into fluorescent magnetic particles for detection and enumeration
of genetic variations. Proc. Natl. Acad. Sci. U. S. A. 100, 8817–8822 (2003).
30. Andries, K. et al. A diarylquinoline drug active on the ATP synthase of Mycobacterium
tuberculosis. Science 307, 223–227 (2005).
31. Velicer, G. J. et al. Comprehensive mutation identification in an evolved bacterial cooperator
and its cheating ancestor. Proc. Natl. Acad. Sci. U. S. A. 103, 8107–8112 (2006).
32. Goldberg, S. M. D. et al. A Sanger/pyrosequencing hybrid approach for the generation
of high-quality draft assemblies of marine microbial genomes. Proc. Natl.
Acad. Sci. U. S. A. 103, 11240–11245 (2006).
33. Oh, J. D. et al. The complete genome sequence of a chronic atrophic gastritis Helicobacter
pylori strain: evolution during disease progression. Proc. Natl. Acad. Sci.
U. S. A. 103, 9999–10004 (2006).
34. Hofreuter, D. et al. Unique features of a highly pathogenic Campylobacter jejuni
strain. Infect. Immun. 74, 4694–4707 (2006).
35. Leininger, S. et al. Archaea predominate among ammonia-oxidizing prokaryotes in
soils. Nature 442, 806–809 (2006).
36. Turnbaugh, P. J. et al. An obesity-associated gut microbiome with increased capacity
for energy harvest. Nature 444, 1027–131 (2006).
37. Angly, F. E. et al. The marine viromes of four oceanic regions. PLoS Biol. 4,
2121–2131 (2006).
38. Krause, L. et al. Finding novel genes in bacterial communities isolated from the
environment. Bioinformatics 22, e281–e289 (2006).
39. Sogin, M. L. et al. Microbial diversity in the deep sea and the underexplored “rare
biosphere.” Proc. Natl Acad. Sci. U. S. A. 103, 12115–12120 (2006).
40. Edwards, R. et al. Using pyrosequencing to shed light on deep mine microbial ecology.
BMC Genomics 7, 57 (2006).