Immunology as a Metaphor for Computational ... - Napier University

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DeclarationI declare that this thesis was composed by myself, that the work contained herein ismy own except where explicitly stated otherwise in the text, and that this work has notbeen submitted for any other degree or professional qualification except as specified.(Emma Hart)iii
To Lucy and Hollyiv
Page 2 and 3: AbstractThe biological immune syste
Page 6: Table of Contents1 Introduction 11.
Page 9 and 10: 5.3.1 Default Parameters . . . . .
Page 11: List of Figures2.1 ’Lock and Key
Page 14 and 15: List of Tables2.1 Structural and fu
Page 16 and 17: Chapter 1IntroductionThe study of b
Page 18 and 19: Chapter 1. Introduction 3scientists
Page 20 and 21: Chapter 1. Introduction 5Thus, the
Page 22 and 23: Chapter 1. Introduction 7of the cha
Page 24 and 25: Chapter 1. Introduction 94. Analysi
Page 26 and 27: Chapter 2. Background 11paratopeepi
Page 28 and 29: Chapter 2. Background 13antigenepit
Page 30 and 31: £Chapter 2. Background 15low the m
Page 32 and 33: Chapter 2. Background 17Antigene 0p
Page 34 and 35: Chapter 2. Background 19maintained
Page 36 and 37: E £ ρ¥ £Chapter 2. Background 2
Page 38 and 39: Chapter 2. Background 23genetically
Page 40 and 41: Chapter 2. Background 251. Choose a
Page 42 and 43: Chapter 2. Background 27non-interbr
Page 44 and 45: Chapter 2. Background 29been made i
Page 46 and 47: Chapter 2. Background 31patterns wi
Page 48 and 49: Chapter 2. Background 33reported on
Page 50 and 51: Chapter 2. Background 35Immunos 81
Page 52 and 53: Chapter 2. Background 37recognition
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Chapter 2. Background 391. Create a
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Chapter 2. Background 41environment
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Chapter 2. Background 43a)input dat
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Chapter 2. Background 45antibody wi
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Chapter 3. Immune Systems for Sched
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££Chapter 3. Immune Systems for S
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Chapter 4Applying an Immune System
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Chapter 4. Applying an Immune Syste
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Chapter 5. EA Based Model — COSDM
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Chapter 6. A Self-Organising SDM
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J:¡Chapter 6. A Self-Organising SD
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¡¡¡Chapter 6. A Self-Organising
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£Chapter 6. A Self-Organising SDM
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Chapter 7Conclusion7.1 OverviewThis
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Chapter 7. Conclusion 181however wh
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Chapter 7. Conclusion 183features m
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Chapter 7. Conclusion 185In additio
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Chapter 7. Conclusion 187ter, sched
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Chapter 7. Conclusion 189Clustering
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Chapter 7. Conclusion 191nature in
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Appendix ACoincidences in permutati
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Appendix BExperimental results obta
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Appendix B. Experimental results ob
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Bibliography 203[Cooke and Hunt, 19
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Bibliography 205[Farmer et al., 198
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Bibliography 207[Hart et al., 1998]
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Bibliography 209[Kohonen, 1982b] Ko
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Bibliography 211[Potter and De Jong
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Bibliography 213[Timmis et al., 199
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