BLAST参数 - abc

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-d Database name (if not set, second sequenceFASTA must be provided) [String] Optional• 选择数据库 ( 如果没有设定就必须提供第二个 FASTA 序列文件 )• default = stdin-j Subject File (for sequence sets comparison)• 不用建好的数据库 , 而直接在含有多个序列的FASTA 文件中进行 blast• 结果不按打分排序 , 而是按照 FASTA 文件中的顺序把每一条序列的 bit score 和 e value 都列举出来
-j 结果不按打分和期望值排序 , 而是按照 FASTA 文件中的原顺序排列
Page 1 and 2: BLAST 参数Bian Yang7 April 2008
Page 3: • -i Query File [File In]• defa
Page 7 and 8: -e Expected value [Real]• 期望
Page 9 and 10: • -F Filter query sequence• 过
Page 11 and 12: • -Q Genetic code for translation
Page 13 and 14: • 6 = flat query-anchored, no ide
Page 15 and 16: 1 = query-anchored showing identiti
Page 17 and 18: 3 = flat query-anchored, show ident
Page 19 and 20: 5 = query-anchored no identities an
Page 21 and 22: 7 = XML Blast output,XML 格式
Page 23 and 24: 9 tabular with comment lines 带
Page 25 and 26: • -H Produce HTML output [T/F]•
Page 27 and 28: • DLG3_HUMAN Name:DLG3 Descriptio
Page 29 and 30: • DLG2_MOUSE Name:Dlg2 Descriptio
Page 31 and 32: • -k Pattern for PHI BLAST [Strin
Page 33 and 34: -P 90• # BLASTP 2.2.15 [Oct-15-20

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