BLAST参数 - abc

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修改 -e 的值 , 可以改变搜索到的序列条数e value 10 1 1.00E-004 1.00E-020seq num 216 173 104 32
• -F Filter query sequence• 过滤查询序列 , 将那些影响比对结果的低复杂度区域过滤掉。• (DUST with blastn, SEG with others) [String]用 blastn 时用 DUST 程序过滤 , 其他的用SEG 过滤。• default = T• -c Mask lower case [T/F]• 屏蔽掉小写字母 [T/F] 默认为 F• default = F
Page 1 and 2: BLAST 参数Bian Yang7 April 2008
Page 3 and 4: • -i Query File [File In]• defa
Page 5 and 6: -j 结果不按打分和期
Page 7: -e Expected value [Real]• 期望
Page 11 and 12: • -Q Genetic code for translation
Page 13 and 14: • 6 = flat query-anchored, no ide
Page 15 and 16: 1 = query-anchored showing identiti
Page 17 and 18: 3 = flat query-anchored, show ident
Page 19 and 20: 5 = query-anchored no identities an
Page 21 and 22: 7 = XML Blast output,XML 格式
Page 23 and 24: 9 tabular with comment lines 带
Page 25 and 26: • -H Produce HTML output [T/F]•
Page 27 and 28: • DLG3_HUMAN Name:DLG3 Descriptio
Page 29 and 30: • DLG2_MOUSE Name:Dlg2 Descriptio
Page 31 and 32: • -k Pattern for PHI BLAST [Strin
Page 33 and 34: -P 90• # BLASTP 2.2.15 [Oct-15-20

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