The techniques of homology cloning and anchored PCR were used to clone the IL-1 β gene fromcobia (<strong>Rachycentron</strong> canadium Linnaeus). The full length cDNA of IL-1 β is 1 104 bp, containing a5' untranslated region (UTR) of 108 bp, an ORF of 741 bp, a encoding polypeptide of 246 aminoacids with an estimated molecular mass of 27.68 kD, and a 3' UTR of 255 bp. The searches fornucleotides and protein sequence similarities with BLAST analysis indicated that the deducedamino acid sequence of cobia IL1 β was homologic to the IL-1 β in other fish species and even themammalian. Conserved signature sequences of IL1 β gene family and several potentialglycosylation sites were found in the cobia IL-1 β deduced amino acid sequence. Analysis with theSignal P software revealed that there was no signal peptide in the sequence, which was commonwith the other known IL-1 β molecules. Just as other nonmammalian IL-1 β genes sequenced todate, the sea perch IL-1 β lacked an aspartic acid in cut region of mammalian IL-1 β which wasrequired for cleavage by ICE (interleukin-1 converting enzyme).185. Renshaw, M.A., Pruett, C.L., Saillant, E., Patton, J.C., Rexroad III, C.E. & Gold, J.R. (2005).Microsatellite markers for cobia, <strong>Rachycentron</strong> Canadum. Gulf of Mexico Science, 23(2), 248-252.Polymerase chain reaction (PCR) primers are reported for 35 nuclear-encoded microsatellitesdeveloped from a genomic library of cobia (<strong>Rachycentron</strong> <strong>canadum</strong>). All 35 microsatellites weretested for reproducibility and polymorphism using 24 cobia sampled offshore of Ocean Springs,MS. Thirty-three of the microsatellites were found to be polymorphic; genotypes at seven of thesediffered significantly from Hardy-Weinberg (HW) expectations, possibly because of the presence ofnull alleles. Levels of allele and gene diversity (expected heterozygosity) were lower on averagethan values reported previously for other marine fishes. The 26 micro-satellites whose genotypeswere in HW equilibrium should provide useful tools for future studies of cobia relating to bothstock assessment and aquaculture.186. Renshaw, M.A., Saillant, E., Bradfield, S.C. & Gold, J.R. (2006). Microsatellite multiplex panelsfor genetic studies of three species of marine fishes: red drum (Sciaenops ocellatus), red snapper(Lutjanus campechanus), and cobia (<strong>Rachycentron</strong> <strong>canadum</strong>). Aquaculture, 253(1-4), 731-735.Multiplex panels of nuclear-encoded microsatellites were developed for three species of marinefishes of interest to both public and private aquaculture ventures: red drum (Sciaenops ocellatus),red snapper (Lutjanus campechanus), and cobia (<strong>Rachycentron</strong> <strong>canadum</strong>). The multiplex panelswill be useful in a variety of applications, including strain and hybrid identification, parentageassignment, pedigree reconstruction, estimating genetic diversity and/or inbreeding, mapping ofquantitative trait loci, and marker-assisted selection. The panels also will be useful in studies ofstock structure of 'wild' populations. Comparison of costs for expendable supplies revealed thatfour- and eight-panel multiplexes reduced expenditures four- and eight-fold, respectively, relative tosingle microsatellite gels. Personnel time also was reduced significantly.187. Ruan, Y., Zhou, W., Li, G. & Zhang, Q. (2014). On mtDNA cytochrome b gene sequencevariation of Cobia (<strong>Rachycentron</strong> <strong>canadum</strong>). Marine Fisheries/Haiyang Yuye, 36(2), 97-101.<strong>Rachycentron</strong> <strong>canadum</strong> is a species widely distributed in warm waters of the bottom of the Atlantic,Indian and western Pacific. It is also a kind of important economic fish. For a long time, affected bynatural and human factors, the number of wild <strong>Rachycentron</strong> <strong>canadum</strong> has decreased sharply. Inorder to provide valuable and referable data for the making of <strong>Rachycentron</strong> <strong>canadum</strong> conservationpolicy and for management of the shrinking population, researches on genetic diversity needs to bestarted.In this study, 883 bp mtDNA cytochrome b sequences from 34 individuals collected fromLianyungang (LYG, n=11), Zhoushan (ZS, n=8), Fangcheng (FC, n=15) were sequenced. Resultswere as follows: 1. Genetic diversity: Five variable sites detected in aligned sequences defined sixhaplotypes, the average haplotypes (h) and nucleotide diversity (π) were 0.324 and 0.0004respectively, indicating a low genetic diversity. LYG contained the highest values of geneticdiversity, the haplotype and nucleotide diversity were 0.473 ± 0.162 and 0.00057 ± 0.00593respectively, whereas ZS showed no genetic variation. 2. Genetic differentiation: Pairwise FSTfromLYG to ZS and FC were 0.029 (P = 0.00) and 0.042 (P = 0.00) respectively, and FST between ZSand FC was -0.04803 (P=0.00), indicating that there was only relatively low differentiation betweenLYG and the other two populations, and no obvious differentiation was found in ZS and FC.Analysis of Molecular Variance (AMOVA) showed that most of genetic variation in threepopulations distributed within populations. This may be due to the fact that the East China Sea,South China Sea and the Yellow Sea have continuity, which promotes groups of communicationbetween genes. Chinese offore <strong>Rachycentron</strong> <strong>canadum</strong> showed low genetic diversity (Hd = 0.324 ±0.103, Pi = 0.0004), and FST, AMOVA and TCS network showed no genetic variation and no55
obvious geographical pattern system within populations. 3. Population expanding: The haplotypenetwork was star-like, Tajima’s D and Fu’s Fs values in three populations of combined neutralitytests were significantly negative (FST= -1.92240, P26 °C) dependence, limiting egg production to springand summer seasons. This method of water temperature manipulation allows for effective control ofthe cobia reproductive cycle without compromising egg viability.189. Xu, Y., Zheng, Y. & Ding, Z. (2010). Cloning and gene expression of ∆6 fatty acid desaturasecDNA of cobia (<strong>Rachycentron</strong> <strong>canadum</strong>). Journal of Fishery Sciences of China, 17(6), 1183-1191.N-3 highly unsaturated fatty acids (HUFAs), eicosapentaenoic (EPA) and docosahexaenoic acids(DHA), are particularly important in the physiological procedures of human beings and animals.However, human and animals including some marine fish species can not synthesize HUFAs fromlinoleic and linolenic acids since they have no or less activity of ∆6 or ∆5 fatty acid desaturases andelongase that are a key for the synthesis of HUFAs. Therefore, they have to ingest HUFAs fromtheir diets for the normal growth and development. Actually, this is a question that should be furtherexplored in some marine fishes. Cobia (<strong>Rachycentron</strong> <strong>canadum</strong>) is a worldwide marine fish intropical, subtropical and warm temperate seas. Cobia is an excellent candidate for aquaculturebecause of its fitting to wide salty, high resistance to diseases, and rapid growth, reaching 6-10 kgin 12-14 months. Marine fish is main source of HUFAs, DHA and EPA for human beings. With thedecline of fishing and rapidly expanding aquaculture, feed-grade fishing has reached sustainablelimits. A developing cobia commercial fishery needs to solve sustainable developing problems ofartificial nutrition feed, using plant products to replace fish products, in which the basis of nutrition,physiology and biochemistry of cobia is necessary to study. Accordingly, ∆6 fatty acid desaturase, akey enzyme in the synthesis of HUFAs in cobia was studied in our experiments. ∆6 fatty aciddesaturase cDNA of cobia (<strong>Rachycentron</strong> <strong>canadum</strong>) was cloned and sequenced as well as itsexpression in different tissues was determined. Total RNA was extracted from the liver of juvenilecobia and amplified using real time-PCR (RT-PCR). The amplified product was a fragment with743bp. The sequence of the fragment of ∆6 fatty acid desaturase from cobia showed great identity(87%) with that of European seabass (Dicentrarchus labrax). The protein sequence of the fragmentincluded two transmembrane regions and two histidine boxes which were composite characteristicsof a microsomal fatty acid desaturase. The enzyme gene expression in different tissues of cobia wasdetermined using real-time quantity PCR (RTQ-PCR) and their expressive orders were as follows:brain > liver > heart, intestine, spleen, kidney and gill > muscle and skin; while no expression wasdetected in adipose tissue. A conclusion is that cobia has ∆6 fatty acid desaturase, which is a keyenzyme for the synthesis of HUFAs. The enzyme gene is maximally expressed in the brain of thefish suggesting that the HUFAs have an important role in central nervous system.56
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COBIA (Rachycentron canadum)A SELEC
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SUBJECT INDEXPage1. General biology
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discontinuous germinal epithelium,
- Page 8 and 9: 15. Darden, T.L., Walker, M.J., Bre
- Page 10 and 11: The partial toxicity tests of coppe
- Page 12 and 13: 30. Franks, J.S., Warren, J.R. & Bu
- Page 14 and 15: 37. Hou, Y., Feng, J., Ning, Z., Ma
- Page 16 and 17: Cobia, Rachycentron canadum, is an
- Page 18 and 19: The spawning season, late June thro
- Page 20 and 21: of IMP to inosine and hypoxanthine
- Page 22 and 23: frequency distributions of males an
- Page 24 and 25: showed that cobia fed the diet cont
- Page 26 and 27: subsp. damselae and may be useful i
- Page 28 and 29: 83. George, P.V. & Nadakal, A.M. (1
- Page 30 and 31: market-size cobia cultured in Erkan
- Page 32 and 33: within 72 hours. This phospholipase
- Page 34 and 35: Eight species of Hemiuroidea are re
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- Page 38 and 39: Taiwan and China. Feed cost is the
- Page 40 and 41: enefit the rural poor, whereas offs
- Page 42 and 43: government, and research institutes
- Page 44 and 45: 137. Kaiser, J.B. & Holt, G.J. (200
- Page 46 and 47: (DHA) and vitamin E levels compared
- Page 48 and 49: and simplify water management. In t
- Page 50 and 51: growth rates (SGR) did not exceed t
- Page 52 and 53: this paper. ANOVA showed that food
- Page 54 and 55: 170. Weirich, C.R., Stokes, A.D., S
- Page 56 and 57: fingerlings for grow-out. This stud
- Page 60 and 61: 190. Zhang, H., Mao, L., Feng, J.,
- Page 62 and 63: This suggests that the enrichment o
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- Page 66 and 67: 208. Weirich, C.R., Stokes, A.D., S
- Page 68 and 69: trypsin activities of intestine of
- Page 70 and 71: decreased gradually as fish body we
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- Page 74 and 75: cobia were 21.72 mg kg -1 , 22.38 m
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- Page 78 and 79: than the optimal requirement of cob
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- Page 82 and 83: soybean meal in Cobia, Rachycentron
- Page 84 and 85: 261. Sun, L., Chen, H., Huang, L.,
- Page 86 and 87: fishes and invertebrates. Here we i
- Page 88 and 89: 274. Watson, A.M., Buentello, A. &
- Page 90 and 91: estimated to be 44.7 mg kg -1 based
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- Page 94 and 95: levels of methionine (0.61%, 0.83%,
- Page 96 and 97: 298. Mach, D.T.N. & Nortvedt, R. (2
- Page 98 and 99: acids (FFA), peroxide value (PV), t
- Page 100 and 101: 068Breitenbach, B.078Brenkert, K.01
- Page 102 and 103: 271Duncan, M.226Dung, L.Q.023DuPaul
- Page 104 and 105: 139, 149Kilduff, P.180Kim, I.H.088K
- Page 106 and 107: 265Myrseth, B.140Nabavi, S.M.B.001,
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244Shi, C.071Shi, G.218, 262, 287Sh
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291Xie, J.269, 270Xu, H.037, 190Xu,