Complete issue - IMA Fungus
Complete issue - IMA Fungus
Complete issue - IMA Fungus
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Muñoz et al.<br />
ARTICLE<br />
100<br />
Leucoagaricus flammeotinctoides GU136173<br />
100<br />
78<br />
Leucoagaricus flammeotinctoides GQ258476<br />
Leucoagaricus flammeotinctoides AY243620<br />
98<br />
100 Leucoagaricus pyrrhophaeus GU136199<br />
Leucoagaricus pyrrhophaeus GQ258473<br />
100<br />
75<br />
Leucoagaricus pyrrhulus GQ258474<br />
Leucoagaricus pyrrhulus GU136201<br />
100<br />
Leucoagaricus erythrophaeus GQ258468<br />
97 Leucoagaricus erythrophaeus GQ258470<br />
Lepiota roseifolia GQ203805<br />
Leucoagaricus decipiens GQ203803<br />
100 Leucoagaricus pardalotus GU136202<br />
Leucoagaricus pardalotus GQ258479<br />
100 Lepiota decorata GU136197<br />
88<br />
Lepiota decorata AY243645<br />
68<br />
Leucoagaricus ionidicolor AY176415<br />
Leucoagaricus marriagei GQ329049<br />
100 Leucoagaricus sp. Weber 6019 AY243633<br />
100<br />
Leucoagaricus brunnescens GQ203804<br />
89<br />
100 Leucoagaricus georginae AY176413<br />
Leucoagaricus georginae GU136198<br />
Leucoagaricus jubilaei AY243635<br />
98 Leucoagaricus badhamii GQ329056<br />
78<br />
Leucoagaricus sp. ecv2484 GU136182<br />
100 Leucoagaricus dyscritus GU136181<br />
Leucoagaricus dyscritus GU136180<br />
100 Leucoagaricus hesperius GU139789<br />
Leucoagaricus hesperius GU139788<br />
Lepiota fuliginescens GU136183<br />
98<br />
Lepiota fuliginescens GU136185<br />
52 Lepiota fuliginescens GU136189<br />
Lepiota flammeotincta GU136170<br />
100 Leucoagaricus sp. Vellinga 2746 AY176440<br />
95<br />
Lepiota flammeotincta GU136167<br />
54 Lepiota fuliginescens GU136187<br />
Leucoagaricus sp. Vellinga 2619 AY243637<br />
Lepiota fuliginescens GU136188<br />
Leucoagaricus sp. Huijser s.n. AY243643<br />
Leucoagaricus adelphicus GQ258478<br />
100<br />
68<br />
Leucoagaricus adelphicus AY243622 Piloselli<br />
Leucoagaricus adelphicus AY243624<br />
100 Leucoagaricus pilatianus GQ329040<br />
Leucoagaricus pilatianus GQ329057<br />
85<br />
93 Leucoagaricus cupresseus GQ258477<br />
95 Leucoagaricus cupresseus GU136194<br />
87 Leucoagaricus cupresseus AY243629<br />
Leucoagaricus cupresseus AY243627<br />
Leucoagaricus cupresseus AY243632<br />
Leucoagaricus variicolor coll. GM-2485 JX880032<br />
100 Leucoagaricus variicolor coll. AH 40328 (holotype) JX880030<br />
Leucoagaricus variicolor coll. GM-2486 JX880033<br />
Leucoagaricus variicolor coll. GM-2454 JX880031<br />
89 Leucoagaricus rubrotinctus JN944081<br />
58 Leucoagaricus rubrotinctus FJ481050<br />
100<br />
Leucoagaricus rubrotinctus JN944082<br />
98<br />
Leucoagaricus sublittoralis AY176442 Rubrotincti<br />
100 Leucoagaricus littoralis GQ329041<br />
Leucoagaricus wychanskyi AF482874<br />
Cystolepiota seminuda AY176350<br />
0.06<br />
Fig. 1. Maximum Likelihood phylogram obtained from the ITS (ITS1-5.8S-ITS2) sequence alignment of Leucoagaricus spp. Cystolepiota<br />
seminuda was used as outgroup taxon. MLB values over 50 % are given above branches. Newly sequenced collections are in bold.<br />
excluded) to the basal septum. Microscopic pictures were<br />
taken on a Moticam 2500 digital camera connected to a Motic<br />
BA300 microscope. Colour notations for the macroscopic<br />
descriptions are from Munsell (1994), hereafter shortened as<br />
Mu. Herbarium acronyms follow Index Herbariorum, except<br />
for GM and AC that refer to the personal herbaria of Guillermo<br />
Muñoz and Agustín Caballero. The type collection is housed<br />
at AH. The name and description of the new species are<br />
deposited in MycoBank (Crous et al. 2004).<br />
DNA extraction, PCR amplification, and DNA<br />
sequencing<br />
Genomic DNA was isolated from 1 mg of a dried herbarium<br />
specimen from four collections (AH-40328, GM-2454, GM-<br />
2485, and GM-2486), using the DNeasy Plant Mini Kit<br />
(Qiagen, Milan) according to the manufacturer’s instructions.<br />
Universal primers ITS1F/ITS4 were used for the ITS region<br />
amplification (White et al. 1990, Gardes & Bruns 1993).<br />
Amplification reactions were performed in a PE9700 thermal<br />
cycler (Perkin-Elmer, Applied Biosystems) following Vizzini et<br />
al. (2011). The PCR products were purified with the AMPure<br />
XP kit (Beckman) and sequenced by MACROGEN (Seoul,<br />
Republic of Korea). The sequences were submitted to<br />
GenBank (http://www.ncbi.nlm.nih.gov/genbank/) and their<br />
accession numbers are reported in Fig. 1.<br />
Sequence alignment and phylogenetic<br />
analysis<br />
The sequences obtained in this study were checked and<br />
assembled using Geneious v. 5.3 (Drummond et al. 2010)<br />
and compared to those available in the GenBank database<br />
by using the Blastn algorithm. Based on the Blastn results,<br />
sequences were selected according to the outcomes of<br />
recent phylogenetic studies on Leucoagaricus (Vellinga<br />
2010, Vellinga et al. 2010, 2011). Alignments were generated<br />
using MUSCLE (Edgar 2004) with default conditions for gap<br />
openings and gap extension penalties. The alignment was<br />
then imported into MEGA v. 5.0 (Tamura et al. 2011) for manual<br />
adjustment. The phylogenetic analysis was performed using<br />
the Maximum Likelihood (ML) approach. Following Vellinga<br />
(2010) and Vellinga et al. (2010), a Cystolepiota seminuda<br />
sequence (AY176350) was used as outgroup. ML estimation<br />
118 ima fUNGUS