22.12.2013 Views

Complete issue - IMA Fungus

Complete issue - IMA Fungus

Complete issue - IMA Fungus

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

Muñoz et al.<br />

ARTICLE<br />

100<br />

Leucoagaricus flammeotinctoides GU136173<br />

100<br />

78<br />

Leucoagaricus flammeotinctoides GQ258476<br />

Leucoagaricus flammeotinctoides AY243620<br />

98<br />

100 Leucoagaricus pyrrhophaeus GU136199<br />

Leucoagaricus pyrrhophaeus GQ258473<br />

100<br />

75<br />

Leucoagaricus pyrrhulus GQ258474<br />

Leucoagaricus pyrrhulus GU136201<br />

100<br />

Leucoagaricus erythrophaeus GQ258468<br />

97 Leucoagaricus erythrophaeus GQ258470<br />

Lepiota roseifolia GQ203805<br />

Leucoagaricus decipiens GQ203803<br />

100 Leucoagaricus pardalotus GU136202<br />

Leucoagaricus pardalotus GQ258479<br />

100 Lepiota decorata GU136197<br />

88<br />

Lepiota decorata AY243645<br />

68<br />

Leucoagaricus ionidicolor AY176415<br />

Leucoagaricus marriagei GQ329049<br />

100 Leucoagaricus sp. Weber 6019 AY243633<br />

100<br />

Leucoagaricus brunnescens GQ203804<br />

89<br />

100 Leucoagaricus georginae AY176413<br />

Leucoagaricus georginae GU136198<br />

Leucoagaricus jubilaei AY243635<br />

98 Leucoagaricus badhamii GQ329056<br />

78<br />

Leucoagaricus sp. ecv2484 GU136182<br />

100 Leucoagaricus dyscritus GU136181<br />

Leucoagaricus dyscritus GU136180<br />

100 Leucoagaricus hesperius GU139789<br />

Leucoagaricus hesperius GU139788<br />

Lepiota fuliginescens GU136183<br />

98<br />

Lepiota fuliginescens GU136185<br />

52 Lepiota fuliginescens GU136189<br />

Lepiota flammeotincta GU136170<br />

100 Leucoagaricus sp. Vellinga 2746 AY176440<br />

95<br />

Lepiota flammeotincta GU136167<br />

54 Lepiota fuliginescens GU136187<br />

Leucoagaricus sp. Vellinga 2619 AY243637<br />

Lepiota fuliginescens GU136188<br />

Leucoagaricus sp. Huijser s.n. AY243643<br />

Leucoagaricus adelphicus GQ258478<br />

100<br />

68<br />

Leucoagaricus adelphicus AY243622 Piloselli<br />

Leucoagaricus adelphicus AY243624<br />

100 Leucoagaricus pilatianus GQ329040<br />

Leucoagaricus pilatianus GQ329057<br />

85<br />

93 Leucoagaricus cupresseus GQ258477<br />

95 Leucoagaricus cupresseus GU136194<br />

87 Leucoagaricus cupresseus AY243629<br />

Leucoagaricus cupresseus AY243627<br />

Leucoagaricus cupresseus AY243632<br />

Leucoagaricus variicolor coll. GM-2485 JX880032<br />

100 Leucoagaricus variicolor coll. AH 40328 (holotype) JX880030<br />

Leucoagaricus variicolor coll. GM-2486 JX880033<br />

Leucoagaricus variicolor coll. GM-2454 JX880031<br />

89 Leucoagaricus rubrotinctus JN944081<br />

58 Leucoagaricus rubrotinctus FJ481050<br />

100<br />

Leucoagaricus rubrotinctus JN944082<br />

98<br />

Leucoagaricus sublittoralis AY176442 Rubrotincti<br />

100 Leucoagaricus littoralis GQ329041<br />

Leucoagaricus wychanskyi AF482874<br />

Cystolepiota seminuda AY176350<br />

0.06<br />

Fig. 1. Maximum Likelihood phylogram obtained from the ITS (ITS1-5.8S-ITS2) sequence alignment of Leucoagaricus spp. Cystolepiota<br />

seminuda was used as outgroup taxon. MLB values over 50 % are given above branches. Newly sequenced collections are in bold.<br />

excluded) to the basal septum. Microscopic pictures were<br />

taken on a Moticam 2500 digital camera connected to a Motic<br />

BA300 microscope. Colour notations for the macroscopic<br />

descriptions are from Munsell (1994), hereafter shortened as<br />

Mu. Herbarium acronyms follow Index Herbariorum, except<br />

for GM and AC that refer to the personal herbaria of Guillermo<br />

Muñoz and Agustín Caballero. The type collection is housed<br />

at AH. The name and description of the new species are<br />

deposited in MycoBank (Crous et al. 2004).<br />

DNA extraction, PCR amplification, and DNA<br />

sequencing<br />

Genomic DNA was isolated from 1 mg of a dried herbarium<br />

specimen from four collections (AH-40328, GM-2454, GM-<br />

2485, and GM-2486), using the DNeasy Plant Mini Kit<br />

(Qiagen, Milan) according to the manufacturer’s instructions.<br />

Universal primers ITS1F/ITS4 were used for the ITS region<br />

amplification (White et al. 1990, Gardes & Bruns 1993).<br />

Amplification reactions were performed in a PE9700 thermal<br />

cycler (Perkin-Elmer, Applied Biosystems) following Vizzini et<br />

al. (2011). The PCR products were purified with the AMPure<br />

XP kit (Beckman) and sequenced by MACROGEN (Seoul,<br />

Republic of Korea). The sequences were submitted to<br />

GenBank (http://www.ncbi.nlm.nih.gov/genbank/) and their<br />

accession numbers are reported in Fig. 1.<br />

Sequence alignment and phylogenetic<br />

analysis<br />

The sequences obtained in this study were checked and<br />

assembled using Geneious v. 5.3 (Drummond et al. 2010)<br />

and compared to those available in the GenBank database<br />

by using the Blastn algorithm. Based on the Blastn results,<br />

sequences were selected according to the outcomes of<br />

recent phylogenetic studies on Leucoagaricus (Vellinga<br />

2010, Vellinga et al. 2010, 2011). Alignments were generated<br />

using MUSCLE (Edgar 2004) with default conditions for gap<br />

openings and gap extension penalties. The alignment was<br />

then imported into MEGA v. 5.0 (Tamura et al. 2011) for manual<br />

adjustment. The phylogenetic analysis was performed using<br />

the Maximum Likelihood (ML) approach. Following Vellinga<br />

(2010) and Vellinga et al. (2010), a Cystolepiota seminuda<br />

sequence (AY176350) was used as outgroup. ML estimation<br />

118 ima fUNGUS

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!