Alternaria redefined - CBS - KNAW

Woudenberg et al.
Table 2. Summary of locus and phylogenetic results as well as a heat map of the Bayesian posterior probabilities and RAxML boostrap support values per Alternaria section.
1-region 2-region 3-region 6-region 1-region 2-region 3-region 6-region
SSU LSU ITS GAPDH RPB2 TEF GAPDH GAPDH RPB2 GAPDH SSU SSU LSU ITS GAPDH RPB2 TEF GAPDH GAPDH RPB2 GAPDH ALL
RPB2 TEF1 TEF1 RPB2 LSU RPB2 TEF1 TEF1 RPB2 LSU
TEF1 ITS TEF1 ITS
GAPDH GAPDH
RPB2 RPB2
TEF1 TEF1
Aligned length 1021 851 499 573 786 269 1359 842 1055 1628 3999 1021 851 499 573 786 269 1359 842 1055 1628 3999
Unique site patterns 45 57 148 272 296 224 568 496 520 792 1042 45 57 148 272 296 224 568 496 520 792 1042
No. of sampled trees 39002 31578 75002 23702 56028 12452 10128 13728 44852 5778 16278
(post burnin)
Bayesian Posterior Probabilities RAxML bootstrap support
Sect. Alternantherae * *
Sect. Alternata
Sect. Brassicicola
Sect. Chalastospora * *
Sect. Cheiranthus * * * * * * * *
Sect. Crivellia * *
Sect. Dianthicola * * * *
Sect. Embellisia * *
Sect. Embellisioides * * * * * *
Sect. Eureka * * * * * *
Sect. Gypsophilae * *
Sect. Infectoriae * * * *
Sect. Japonicae
Sect. Nimbya
Sect. panax * *
Sect. Phragmosporae * * * *
Sect. Porri * *
Sect. Pseudoulocladium * * * * * * * *
Sect. Radicina
Sect. Sonchi * * * *
Sect. Teretispora
Sect. Ulocladioides * * * *
Sect. Ulocladium * *
1.00 0.95–0.99 0.90–0.94 0.80–0.89 0.70–0.79 100 95–99 90–94 80–89 70–79
0.50–0.69 0.25–0.49 0.01–0.24 no support 50–69 25–49 1–24 no support
*= section not complete *= section not complete
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